CircRNA Information

General Information
circRNA Basic Information
CircID chr6:33416758|33417310
Strand -
CircType exon
Host Gene ENSG00000112514.14;
Algorism CIRI2;
Sequence TTCGTAAGGGTGCACAGAACGAACAAAATCTGTCAAAGCTGGGACCAAGGAACTTTGGGTTTTAATCATCTAAGGGACAAAGATAAACATGGTTGAATCAAGGAGTGGGATTGAGTTCAGTTTCTCAGAAGAGGGGTAAGGGCTAAAGGGGTCAGGGATTGGGGATATTTTGTTGGGTGGGGGAAATGTTTCTCACCATCAGCACCTCACTGTCTTCCTCGATCTTCCCTTTCCACTCATAGCTGAAAGGTCAGAGGGGGAGAGTTGTGGGGAGCAAAGAATTTCCCCCAGGAAAGAGGTTCCCAGTCAGCTCCTACAGTTAGGTTAACCCCCCAACTCCTATGACTCACATGGATGTAATCTGAGGGATGAGGTTGACGCAGGCTGCTAGGCGCTTCTCCACCACGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:33416758|33417310 hsa-miR-15a-5p 0 0 1
chr6:33416758|33417310 hsa-miR-15a-3p 0 0 1
chr6:33416758|33417310 hsa-miR-15b-5p 0 0 1
chr6:33416758|33417310 hsa-miR-15b-3p 0 0 1
chr6:33416758|33417310 hsa-miR-195-5p 0 0 1
chr6:33416758|33417310 hsa-miR-195-3p 0 0 1
chr6:33416758|33417310 hsa-miR-375-5p 0 0 1
chr6:33416758|33417310 hsa-miR-375-3p 0 0 1
chr6:33416758|33417310 hsa-miR-133b 0 1 1
chr6:33416758|33417310 hsa-miR-424-5p 0 0 1
chr6:33416758|33417310 hsa-miR-424-3p 0 0 1
chr6:33416758|33417310 hsa-miR-494-5p 0 0 1
chr6:33416758|33417310 hsa-miR-494-3p 0 0 1
chr6:33416758|33417310 hsa-miR-497-5p 0 0 1
chr6:33416758|33417310 hsa-miR-497-3p 0 0 1
chr6:33416758|33417310 hsa-miR-503-5p 0 0 1
chr6:33416758|33417310 hsa-miR-503-3p 0 0 1
chr6:33416758|33417310 hsa-miR-539-5p 0 0 1
chr6:33416758|33417310 hsa-miR-539-3p 0 0 1
chr6:33416758|33417310 hsa-miR-571 0 0 1
chr6:33416758|33417310 hsa-miR-596 0 0 1
chr6:33416758|33417310 hsa-miR-611 0 0 1
chr6:33416758|33417310 hsa-miR-625-5p 0 0 1
chr6:33416758|33417310 hsa-miR-625-3p 0 0 1
chr6:33416758|33417310 hsa-miR-637 0 0 1
chr6:33416758|33417310 hsa-miR-646 0 0 1
chr6:33416758|33417310 hsa-miR-708-5p 0 0 1
chr6:33416758|33417310 hsa-miR-708-3p 0 0 1
chr6:33416758|33417310 hsa-miR-938 0 0 1
chr6:33416758|33417310 hsa-miR-1183 0 1 1
chr6:33416758|33417310 hsa-miR-1294 0 0 1
chr6:33416758|33417310 hsa-miR-1275 0 1 1
chr6:33416758|33417310 hsa-miR-1292-5p 0 0 1
chr6:33416758|33417310 hsa-miR-1292-3p 0 0 1
chr6:33416758|33417310 hsa-miR-361-3p 0 0 1
chr6:33416758|33417310 hsa-miR-28-5p 0 0 1
chr6:33416758|33417310 hsa-miR-502-5p 0 0 1
chr6:33416758|33417310 hsa-miR-125a-5p 1 0 1
chr6:33416758|33417310 hsa-miR-483-3p 0 0 1
chr6:33416758|33417310 hsa-miR-151-5p 0 0 1
chr6:33416758|33417310 hsa-miR-125b 0 0 1
chr6:33416758|33417310 hsa-miR-16 0 0 1
chr6:33416758|33417310 hsa-miR-7 0 0 1
chr6:33416758|33417310 hsa-miR-514 0 0 1
chr6:33416758|33417310 hsa-miR-129-3p 0 0 1
chr6:33416758|33417310 hsa-miR-133a 0 0 1
chr6:33416758|33417310 hsa-miR-554 1 0 0
chr6:33416758|33417310 hsa-miR-4286 1 0 0
chr6:33416758|33417310 hsa-miR-4330 0 1 0
chr6:33416758|33417310 hsa-miR-4516 0 1 0
chr6:33416758|33417310 hsa-miR-3978 0 1 0
chr6:33416758|33417310 hsa-miR-4780 1 0 0
chr6:33416758|33417310 hsa-miR-6745 0 1 0
chr6:33416758|33417310 hsa-miR-7706 0 1 0
chr6:33416758|33417310 hsa-miR-9500 0 1 0
chr6:33416758|33417310 hsa-miR-138-5p 0 1 0
chr6:33416758|33417310 hsa-miR-7-5p 0 1 0
chr6:33416758|33417310 hsa-miR-6881-3p 1 0 0
chr6:33416758|33417310 hsa-miR-6880-5p 1 1 0
chr6:33416758|33417310 hsa-miR-6741-5p 1 0 0
chr6:33416758|33417310 hsa-miR-6849-3p 0 1 0
chr6:33416758|33417310 hsa-miR-7110-3p 0 1 0
chr6:33416758|33417310 hsa-miR-6817-3p 1 0 0
chr6:33416758|33417310 hsa-miR-6871-5p 0 1 0
chr6:33416758|33417310 hsa-miR-6796-5p 1 0 0
chr6:33416758|33417310 hsa-miR-6760-5p 0 1 0
chr6:33416758|33417310 hsa-miR-1343-3p 1 0 0
chr6:33416758|33417310 hsa-miR-6763-3p 1 0 0
chr6:33416758|33417310 hsa-miR-378a-5p 1 0 0
chr6:33416758|33417310 hsa-miR-937-5p 0 1 0
chr6:33416758|33417310 hsa-miR-941 1 0 0
chr6:33416758|33417310 hsa-miR-339-5p 1 0 0
chr6:33416758|33417310 hsa-miR-6825-3p 1 0 0
chr6:33416758|33417310 hsa-miR-345-5p 1 0 0
chr6:33416758|33417310 hsa-miR-7106-3p 1 0 0
chr6:33416758|33417310 hsa-miR-4732-3p 1 1 0
chr6:33416758|33417310 hsa-miR-6793-3p 1 0 0
chr6:33416758|33417310 hsa-miR-670-3p 0 1 0
chr6:33416758|33417310 hsa-miR-2276-5p 0 1 0
chr6:33416758|33417310 hsa-miR-3151-3p 1 0 0
chr6:33416758|33417310 hsa-miR-6859-3p 1 0 0
chr6:33416758|33417310 hsa-miR-6748-3p 1 0 0
chr6:33416758|33417310 hsa-miR-6851-3p 1 0 0
chr6:33416758|33417310 hsa-miR-4750-3p 1 0 0
chr6:33416758|33417310 hsa-miR-6846-3p 1 1 0
chr6:33416758|33417310 hsa-miR-1249-3p 0 1 0
chr6:33416758|33417310 hsa-miR-7158-5p 1 0 0
chr6:33416758|33417310 hsa-miR-4714-5p 1 0 0
chr6:33416758|33417310 hsa-miR-3156-3p 0 1 0
chr6:33416758|33417310 hsa-miR-133a-3p 0 1 0
chr6:33416758|33417310 hsa-miR-4716-5p 0 1 0
chr6:33416758|33417310 hsa-miR-6812-5p 0 1 0
chr6:33416758|33417310 hsa-miR-6819-5p 1 0 0
chr6:33416758|33417310 hsa-miR-6780b-5p 0 1 0
chr6:33416758|33417310 hsa-miR-939-5p 1 0 0
chr6:33416758|33417310 hsa-miR-4758-5p 0 1 0
chr6:33416758|33417310 hsa-miR-4646-5p 0 1 0
chr6:33416758|33417310 hsa-miR-6756-3p 1 0 0
chr6:33416758|33417310 hsa-miR-6784-3p 1 0 0
chr6:33416758|33417310 hsa-miR-129-1-3p 1 1 0
chr6:33416758|33417310 hsa-miR-129-2-3p 1 1 0
chr6:33416758|33417310 hsa-miR-4524a-5p 0 1 0
chr6:33416758|33417310 hsa-miR-450a-1-3p 0 1 0
chr6:33416758|33417310 hsa-miR-301a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:33416758|33417310
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MWGAKNFPQERGSQSAPTVRLTPQLL
Nucleotide Sequence TTGTGGGGAGCAAAGAATTTCCCCCAGGAAAGAGGTTCCCAGTCAGCTCCTACAGTTAGGTTAACCCCCCAACTCCTATGA
CircID chr6:33416758|33417310
ORF Type ORF2
Protein Length 52
Nucleotide Length 159
Protein Sequence MLGGGNVSHHQHLTVFLDLPFPLIAERSEGESCGEQRISPRKEVPSQLLQLG
Nucleotide Sequence TTGTTGGGTGGGGGAAATGTTTCTCACCATCAGCACCTCACTGTCTTCCTCGATCTTCCCTTTCCACTCATAGCTGAAAGGTCAGAGGGGGAGAGTTGTGGGGAGCAAAGAATTTCCCCCAGGAAAGAGGTTCCCAGTCAGCTCCTACAGTTAGGTTAA
CircID chr6:33416758|33417310
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MGIFCWVGEMFLTISTSLSSSIFPFHS
Nucleotide Sequence TTGGGGATATTTTGTTGGGTGGGGGAAATGTTTCTCACCATCAGCACCTCACTGTCTTCCTCGATCTTCCCTTTCCACTCATAG
CircID chr6:33416758|33417310
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MKGQRGRVVGSKEFPPGKRFPVSSYS
Nucleotide Sequence CTGAAAGGTCAGAGGGGGAGAGTTGTGGGGAGCAAAGAATTTCCCCCAGGAAAGAGGTTCCCAGTCAGCTCCTACAGTTAG
CircID chr6:33416758|33417310
ORF Type ORF5
Protein Length 48
Nucleotide Length 147
Protein Sequence MRQPHPSDYIHVSHRSWGVNLTVGADWEPLSWGKFFAPHNSPPLTFQL
Nucleotide Sequence CTGCGTCAACCTCATCCCTCAGATTACATCCATGTGAGTCATAGGAGTTGGGGGGTTAACCTAACTGTAGGAGCTGACTGGGAACCTCTTTCCTGGGGGAAATTCTTTGCTCCCCACAACTCTCCCCCTCTGACCTTTCAGCTATGA
CircID chr6:33416758|33417310
ORF Type ORF6
Protein Length 35
Nucleotide Length 108
Protein Sequence MGTSFLGEILCSPQLSPSDLSAMSGKGRSRKTVRC
Nucleotide Sequence CTGGGAACCTCTTTCCTGGGGGAAATTCTTTGCTCCCCACAACTCTCCCCCTCTGACCTTTCAGCTATGAGTGGAAAGGGAAGATCGAGGAAGACAGTGAGGTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab