CircRNA Information

General Information
circRNA Basic Information
CircID chr6:34418580|34418733
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TCCCTTTGTTATCTAGATGCTGCTGTGAAGTGGGTAAGTCAGTCAGTGTGATAGGAAGTAGGAATCCTTTGGGAGGATTTATAGTTTGGGCTGTGAGTATTGAAGGGTGACATAAGGAAGGCTGAGAAGGGTGCCCCAGGAGAGACAAAGGTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:34418580|34418733 hsa-miR-15a-5p 0 0 1
chr6:34418580|34418733 hsa-miR-15a-3p 0 0 1
chr6:34418580|34418733 hsa-miR-27a-5p 0 0 1
chr6:34418580|34418733 hsa-miR-27a-3p 0 0 1
chr6:34418580|34418733 hsa-miR-107 0 1 1
chr6:34418580|34418733 hsa-miR-15b-5p 0 0 1
chr6:34418580|34418733 hsa-miR-15b-3p 0 0 1
chr6:34418580|34418733 hsa-miR-27b-5p 0 0 1
chr6:34418580|34418733 hsa-miR-27b-3p 0 0 1
chr6:34418580|34418733 hsa-miR-150-5p 0 0 1
chr6:34418580|34418733 hsa-miR-150-3p 0 0 1
chr6:34418580|34418733 hsa-miR-195-5p 0 0 1
chr6:34418580|34418733 hsa-miR-195-3p 0 0 1
chr6:34418580|34418733 hsa-miR-424-5p 0 0 1
chr6:34418580|34418733 hsa-miR-424-3p 0 0 1
chr6:34418580|34418733 hsa-miR-495-5p 0 0 1
chr6:34418580|34418733 hsa-miR-495-3p 0 0 1
chr6:34418580|34418733 hsa-miR-497-5p 0 0 1
chr6:34418580|34418733 hsa-miR-497-3p 0 0 1
chr6:34418580|34418733 hsa-miR-577 0 0 1
chr6:34418580|34418733 hsa-miR-593-5p 0 0 1
chr6:34418580|34418733 hsa-miR-593-3p 0 0 1
chr6:34418580|34418733 hsa-miR-605-5p 0 0 1
chr6:34418580|34418733 hsa-miR-605-3p 0 0 1
chr6:34418580|34418733 hsa-miR-486-3p 0 0 1
chr6:34418580|34418733 hsa-miR-513a-5p 0 0 1
chr6:34418580|34418733 hsa-miR-337-3p 0 0 1
chr6:34418580|34418733 hsa-miR-103 0 0 1
chr6:34418580|34418733 hsa-miR-16 0 0 1
chr6:34418580|34418733 hsa-miR-637 1 0 0
chr6:34418580|34418733 hsa-miR-4287 1 0 0
chr6:34418580|34418733 hsa-miR-5685 0 1 0
chr6:34418580|34418733 hsa-miR-7703 1 0 0
chr6:34418580|34418733 hsa-miR-9899 1 0 0
chr6:34418580|34418733 hsa-miR-12126 1 0 0
chr6:34418580|34418733 hsa-miR-6879-3p 1 0 0
chr6:34418580|34418733 hsa-miR-138-1-3p 0 1 0
chr6:34418580|34418733 hsa-miR-6845-3p 1 0 0
chr6:34418580|34418733 hsa-miR-1343-3p 1 1 0
chr6:34418580|34418733 hsa-miR-615-5p 1 0 0
chr6:34418580|34418733 hsa-miR-103a-3p 0 1 0
chr6:34418580|34418733 hsa-miR-4646-3p 1 0 0
chr6:34418580|34418733 hsa-miR-211-5p 1 0 0
chr6:34418580|34418733 hsa-miR-6871-3p 1 0 0
chr6:34418580|34418733 hsa-miR-6782-3p 1 1 0
chr6:34418580|34418733 hsa-miR-6895-3p 1 0 0
chr6:34418580|34418733 hsa-miR-6856-3p 0 1 0
chr6:34418580|34418733 hsa-miR-6886-3p 1 0 0
chr6:34418580|34418733 hsa-miR-541-5p 0 1 0
chr6:34418580|34418733 hsa-miR-1249-3p 0 1 0
chr6:34418580|34418733 hsa-miR-6759-3p 1 1 0
chr6:34418580|34418733 hsa-miR-6789-3p 1 0 0
chr6:34418580|34418733 hsa-miR-186-3p 0 1 0
chr6:34418580|34418733 hsa-miR-10398-5p 1 0 0
chr6:34418580|34418733 hsa-miR-6791-5p 1 0 0
chr6:34418580|34418733 hsa-miR-6893-3p 1 0 0
chr6:34418580|34418733 hsa-miR-6783-3p 0 1 0
chr6:34418580|34418733 hsa-miR-6848-3p 1 0 0
chr6:34418580|34418733 hsa-miR-4690-3p 0 1 0
chr6:34418580|34418733 hsa-miR-200c-5p 1 0 0
chr6:34418580|34418733 hsa-miR-6855-3p 0 1 0
chr6:34418580|34418733 hsa-miR-3927-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:34418580|34418733
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MLSRCCCEVGKSVSVIGSRNPLGGFIVWAVSIEG
Nucleotide Sequence TTGTTATCTAGATGCTGCTGTGAAGTGGGTAAGTCAGTCAGTGTGATAGGAAGTAGGAATCCTTTGGGAGGATTTATAGTTTGGGCTGTGAGTATTGAAGGGTGA
CircID chr6:34418580|34418733
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MSLLGHPSQPSLCHPSILTAQTINPPKGFLLPITLTDLPTSQQHLDNKG
Nucleotide Sequence TTGTCTCTCCTGGGGCACCCTTCTCAGCCTTCCTTATGTCACCCTTCAATACTCACAGCCCAAACTATAAATCCTCCCAAAGGATTCCTACTTCCTATCACACTGACTGACTTACCCACTTCACAGCAGCATCTAGATAACAAAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab