CircRNA Information

General Information
circRNA Basic Information
CircID chr6:36128182|36128327
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence AGCCTGATTCTAGAGTCCCTGCTCTTGGCTGCGAGGCTATGCGGTGGCCTAGAGTTGACAGAATTGCTCCTCAAAGGAAATGGCCTTGCCCACATCATAAGGACATGTCTACTGATCCAACCATGTCTCCCTCAGTCCATCCTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:36128182|36128327 hsa-miR-335-5p 0 0 1
chr6:36128182|36128327 hsa-miR-335-3p 0 0 1
chr6:36128182|36128327 hsa-miR-484 0 0 1
chr6:36128182|36128327 hsa-miR-505-5p 0 0 1
chr6:36128182|36128327 hsa-miR-505-3p 0 0 1
chr6:36128182|36128327 hsa-miR-618 0 0 1
chr6:36128182|36128327 hsa-miR-645 0 0 1
chr6:36128182|36128327 hsa-miR-411-5p 0 0 1
chr6:36128182|36128327 hsa-miR-411-3p 0 0 1
chr6:36128182|36128327 hsa-miR-936 0 0 1
chr6:36128182|36128327 hsa-miR-1304-5p 0 0 1
chr6:36128182|36128327 hsa-miR-1304-3p 0 0 1
chr6:36128182|36128327 hsa-miR-1272 0 0 1
chr6:36128182|36128327 hsa-miR-1288-5p 0 0 1
chr6:36128182|36128327 hsa-miR-1288-3p 0 0 1
chr6:36128182|36128327 hsa-miR-1322 0 0 1
chr6:36128182|36128327 hsa-miR-1224-5p 0 0 1
chr6:36128182|36128327 hsa-miR-299-3p 0 0 1
chr6:36128182|36128327 hsa-miR-199b-3p 0 0 1
chr6:36128182|36128327 hsa-miR-199a-3p 0 0 1
chr6:36128182|36128327 hsa-miR-1269 0 0 1
chr6:36128182|36128327 hsa-miR-762 1 0 0
chr6:36128182|36128327 hsa-miR-1293 1 0 0
chr6:36128182|36128327 hsa-miR-1269a 0 1 0
chr6:36128182|36128327 hsa-miR-1193 1 0 0
chr6:36128182|36128327 hsa-miR-4265 1 0 0
chr6:36128182|36128327 hsa-miR-4476 1 0 0
chr6:36128182|36128327 hsa-miR-4479 1 0 0
chr6:36128182|36128327 hsa-miR-4486 1 0 0
chr6:36128182|36128327 hsa-miR-2392 1 1 0
chr6:36128182|36128327 hsa-miR-4510 0 1 0
chr6:36128182|36128327 hsa-miR-1269b 0 1 0
chr6:36128182|36128327 hsa-miR-1587 1 0 0
chr6:36128182|36128327 hsa-miR-4651 1 0 0
chr6:36128182|36128327 hsa-miR-4656 1 0 0
chr6:36128182|36128327 hsa-miR-4689 0 1 0
chr6:36128182|36128327 hsa-miR-4706 1 0 0
chr6:36128182|36128327 hsa-miR-4739 1 0 0
chr6:36128182|36128327 hsa-miR-6081 1 0 0
chr6:36128182|36128327 hsa-miR-6085 1 0 0
chr6:36128182|36128327 hsa-miR-6127 1 1 0
chr6:36128182|36128327 hsa-miR-6133 1 1 0
chr6:36128182|36128327 hsa-miR-12119 1 0 0
chr6:36128182|36128327 hsa-miR-92a-1-5p 1 0 0
chr6:36128182|36128327 hsa-miR-4665-3p 1 0 0
chr6:36128182|36128327 hsa-miR-1287-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6894-5p 1 0 0
chr6:36128182|36128327 hsa-miR-8071 1 0 0
chr6:36128182|36128327 hsa-miR-5187-5p 1 0 0
chr6:36128182|36128327 hsa-miR-4695-5p 1 0 0
chr6:36128182|36128327 hsa-miR-4722-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6806-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6721-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6827-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6760-5p 0 1 0
chr6:36128182|36128327 hsa-miR-6810-5p 1 0 0
chr6:36128182|36128327 hsa-miR-1226-5p 1 0 0
chr6:36128182|36128327 hsa-miR-4743-3p 0 1 0
chr6:36128182|36128327 hsa-miR-149-3p 1 0 0
chr6:36128182|36128327 hsa-miR-103b 0 1 0
chr6:36128182|36128327 hsa-miR-7112-5p 1 0 0
chr6:36128182|36128327 hsa-miR-664b-5p 1 0 0
chr6:36128182|36128327 hsa-miR-1225-5p 1 0 0
chr6:36128182|36128327 hsa-miR-4717-5p 0 1 0
chr6:36128182|36128327 hsa-miR-1207-5p 1 1 0
chr6:36128182|36128327 hsa-miR-4763-3p 1 1 0
chr6:36128182|36128327 hsa-miR-6812-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6870-5p 1 0 0
chr6:36128182|36128327 hsa-miR-1343-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6769a-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6813-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6819-5p 1 0 0
chr6:36128182|36128327 hsa-miR-10401-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6879-5p 1 0 0
chr6:36128182|36128327 hsa-miR-3620-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6836-5p 1 0 0
chr6:36128182|36128327 hsa-miR-4649-5p 1 0 0
chr6:36128182|36128327 hsa-miR-4749-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6729-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6735-5p 1 1 0
chr6:36128182|36128327 hsa-miR-6794-5p 1 0 0
chr6:36128182|36128327 hsa-miR-6887-5p 1 0 0
chr6:36128182|36128327 hsa-miR-939-5p 1 0 0
chr6:36128182|36128327 hsa-miR-1301-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:36128182|36128327
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MILESLLLAARLCGGLELTELLLKGNGLAHIIRTCLLIQPCLPQSIL
Nucleotide Sequence CTGATTCTAGAGTCCCTGCTCTTGGCTGCGAGGCTATGCGGTGGCCTAGAGTTGACAGAATTGCTCCTCAAAGGAAATGGCCTTGCCCACATCATAAGGACATGTCTACTGATCCAACCATGTCTCCCTCAGTCCATCCTG
CircID chr6:36128182|36128327
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MRWPRVDRIAPQRKWPCPHHKDMSTDPTMSPSVHPA
Nucleotide Sequence ATGCGGTGGCCTAGAGTTGACAGAATTGCTCCTCAAAGGAAATGGCCTTGCCCACATCATAAGGACATGTCTACTGATCCAACCATGTCTCCCTCAGTCCATCCTGCC
CircID chr6:36128182|36128327
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MMWARPFPLRSNSVNSRPPHSLAAKSRDSRIR
Nucleotide Sequence ATGATGTGGGCAAGGCCATTTCCTTTGAGGAGCAATTCTGTCAACTCTAGGCCACCGCATAGCCTCGCAGCCAAGAGCAGGGACTCTAGAATCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab