CircRNA Information

General Information
circRNA Basic Information
CircID chr6:36231250|36231436
Strand +
CircType exon
Host Gene ENSG00000096070.18;
Algorism CIRI2;
Sequence CTCGTGGCAGCAAAGAAAAAAACAAGAGGGGACCCGCCTTGATCCAGGGGGCACACTTGCAGAGCTGGGAAGTTGTGTCAACAGCTAAAGGGAAGGTCTGTGGGTGGGAGGTGGTGTCCTGGGGGAGGGGGTCATAGGTTGTGGGCTGGCCTCTGTCTGGGCCTGAGGAGCCTGGCAGAGACACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:36231250|36231436 hsa-miR-204-5p 0 0 1
chr6:36231250|36231436 hsa-miR-204-3p 0 0 1
chr6:36231250|36231436 hsa-miR-211-5p 0 0 1
chr6:36231250|36231436 hsa-miR-211-3p 0 0 1
chr6:36231250|36231436 hsa-miR-484 1 0 1
chr6:36231250|36231436 hsa-miR-593-5p 0 0 1
chr6:36231250|36231436 hsa-miR-593-3p 0 0 1
chr6:36231250|36231436 hsa-miR-595 0 1 1
chr6:36231250|36231436 hsa-miR-623 0 0 1
chr6:36231250|36231436 hsa-miR-648 0 0 1
chr6:36231250|36231436 hsa-miR-1267 0 0 1
chr6:36231250|36231436 hsa-miR-1197 0 1 1
chr6:36231250|36231436 hsa-miR-1324 0 1 1
chr6:36231250|36231436 hsa-miR-532-3p 0 1 1
chr6:36231250|36231436 hsa-miR-361-3p 0 0 1
chr6:36231250|36231436 hsa-miR-1224-3p 0 0 1
chr6:36231250|36231436 hsa-miR-331-3p 0 0 1
chr6:36231250|36231436 hsa-miR-220b 0 0 1
chr6:36231250|36231436 hsa-miR-1260 0 0 1
chr6:36231250|36231436 hsa-miR-1280 0 0 1
chr6:36231250|36231436 hsa-miR-514 0 0 1
chr6:36231250|36231436 hsa-miR-346 1 0 0
chr6:36231250|36231436 hsa-miR-617 0 1 0
chr6:36231250|36231436 hsa-miR-663a 1 0 0
chr6:36231250|36231436 hsa-miR-3155a 0 1 0
chr6:36231250|36231436 hsa-miR-4313 0 1 0
chr6:36231250|36231436 hsa-miR-3155b 0 1 0
chr6:36231250|36231436 hsa-miR-4484 1 0 0
chr6:36231250|36231436 hsa-miR-3972 1 0 0
chr6:36231250|36231436 hsa-miR-4673 0 1 0
chr6:36231250|36231436 hsa-miR-5685 0 1 0
chr6:36231250|36231436 hsa-miR-12121 0 1 0
chr6:36231250|36231436 hsa-miR-197-3p 0 1 0
chr6:36231250|36231436 hsa-miR-4747-3p 1 0 0
chr6:36231250|36231436 hsa-miR-4700-3p 0 1 0
chr6:36231250|36231436 hsa-miR-3194-3p 0 1 0
chr6:36231250|36231436 hsa-miR-6836-3p 1 0 0
chr6:36231250|36231436 hsa-miR-6720-5p 1 0 0
chr6:36231250|36231436 hsa-miR-6892-3p 1 0 0
chr6:36231250|36231436 hsa-miR-1225-3p 1 0 0
chr6:36231250|36231436 hsa-miR-4755-3p 0 1 0
chr6:36231250|36231436 hsa-miR-6849-3p 1 0 0
chr6:36231250|36231436 hsa-miR-659-3p 1 0 0
chr6:36231250|36231436 hsa-miR-3194-5p 1 0 0
chr6:36231250|36231436 hsa-miR-6858-3p 1 0 0
chr6:36231250|36231436 hsa-miR-4713-5p 1 0 0
chr6:36231250|36231436 hsa-miR-6884-3p 1 0 0
chr6:36231250|36231436 hsa-miR-615-5p 1 0 0
chr6:36231250|36231436 hsa-miR-4763-5p 1 0 0
chr6:36231250|36231436 hsa-miR-4707-3p 1 0 0
chr6:36231250|36231436 hsa-miR-6803-3p 1 0 0
chr6:36231250|36231436 hsa-miR-7113-3p 1 0 0
chr6:36231250|36231436 hsa-miR-6818-3p 0 1 0
chr6:36231250|36231436 hsa-miR-4640-3p 1 1 0
chr6:36231250|36231436 hsa-miR-1306-5p 0 1 0
chr6:36231250|36231436 hsa-miR-2276-3p 0 1 0
chr6:36231250|36231436 hsa-miR-339-5p 1 0 0
chr6:36231250|36231436 hsa-miR-4708-3p 1 1 0
chr6:36231250|36231436 hsa-miR-3940-3p 1 0 0
chr6:36231250|36231436 hsa-miR-6865-3p 1 0 0
chr6:36231250|36231436 hsa-miR-4749-3p 1 0 0
chr6:36231250|36231436 hsa-miR-6859-3p 1 0 0
chr6:36231250|36231436 hsa-miR-4649-3p 1 0 0
chr6:36231250|36231436 hsa-miR-3670 1 0 0
chr6:36231250|36231436 hsa-miR-6759-3p 1 0 0
chr6:36231250|36231436 hsa-miR-4727-5p 0 1 0
chr6:36231250|36231436 hsa-miR-6800-3p 1 0 0
chr6:36231250|36231436 hsa-miR-3162-3p 1 0 0
chr6:36231250|36231436 hsa-miR-3156-3p 1 1 0
chr6:36231250|36231436 hsa-miR-6756-3p 1 0 0
chr6:36231250|36231436 hsa-miR-6819-3p 1 0 0
chr6:36231250|36231436 hsa-miR-6823-3p 1 0 0
chr6:36231250|36231436 hsa-miR-4691-5p 0 1 0
chr6:36231250|36231436 hsa-miR-4690-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr6:36231250|36231436
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MCQQLKGRSVGGRWCPGGGGHRLWAGLCLGLRSLAETP
Nucleotide Sequence TTGTGTCAACAGCTAAAGGGAAGGTCTGTGGGTGGGAGGTGGTGTCCTGGGGGAGGGGGTCATAGGTTGTGGGCTGGCCTCTGTCTGGGCCTGAGGAGCCTGGCAGAGACACCA

CircID chr6:36231250|36231436
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MIQGAHLQSWEVVSTAKGKVCGWEVVSWGRGS
Nucleotide Sequence TTGATCCAGGGGGCACACTTGCAGAGCTGGGAAGTTGTGTCAACAGCTAAAGGGAAGGTCTGTGGGTGGGAGGTGGTGTCCTGGGGGAGGGGGTCATAG

CircID chr6:36231250|36231436
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MPGSSGPDRGQPTTYDPLPQDTTSHPQTFPLAVDTTSQLCKCAPWIKAGPLLFFSLLPR
Nucleotide Sequence CTGCCAGGCTCCTCAGGCCCAGACAGAGGCCAGCCCACAACCTATGACCCCCTCCCCCAGGACACCACCTCCCACCCACAGACCTTCCCTTTAGCTGTTGACACAACTTCCCAGCTCTGCAAGTGTGCCCCCTGGATCAAGGCGGGTCCCCTCTTGTTTTTTTCTTTGCTGCCACGA

CircID chr6:36231250|36231436
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MLTQLPSSASVPPGSRRVPSCFFLCCHE
Nucleotide Sequence CTGTTGACACAACTTCCCAGCTCTGCAAGTGTGCCCCCTGGATCAAGGCGGGTCCCCTCTTGTTTTTTTCTTTGCTGCCACGAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites