CircRNA Information

General Information
circRNA Basic Information
CircID chr6:36685990|36686214
Strand -
CircType exon
Host Gene ENSG00000124762.12;
Algorism CIRI2;
Sequence TAGGCGGTTGAATGAGAGGTTCCTAAGAGTGCTGGGCATTTTTATTTTATGAAATACTATTTAAAGCCTCCTCATCCCGTGTTCTCCTTTTCCTCTCTCCCGGAGGTTGGGTGGGCCGGCTTCATGCCAGCTACTTCCTCCTCCCCACTTGTCCGCTGGGTGGTACCCTCTGGAGGGGTGTGGCTCCTTCCCATCGCTGTCACAGGCGGTTATGAAATTCACCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:36685990|36686214 hsa-miR-185-5p 0 0 1
chr6:36685990|36686214 hsa-miR-185-3p 0 0 1
chr6:36685990|36686214 hsa-miR-562 0 0 1
chr6:36685990|36686214 hsa-miR-602 0 0 1
chr6:36685990|36686214 hsa-miR-765 0 1 1
chr6:36685990|36686214 hsa-miR-939-5p 0 0 1
chr6:36685990|36686214 hsa-miR-939-3p 0 0 1
chr6:36685990|36686214 hsa-miR-1255a 0 0 1
chr6:36685990|36686214 hsa-miR-491-5p 0 0 1
chr6:36685990|36686214 hsa-miR-525-5p 0 1 1
chr6:36685990|36686214 hsa-miR-520a-5p 0 1 1
chr6:36685990|36686214 hsa-miR-542-3p 0 0 1
chr6:36685990|36686214 hsa-miR-548c-3p 0 0 1
chr6:36685990|36686214 hsa-miR-1255b 0 0 1
chr6:36685990|36686214 hsa-miR-365 0 0 1
chr6:36685990|36686214 hsa-miR-762 1 0 0
chr6:36685990|36686214 hsa-miR-3125 0 1 0
chr6:36685990|36686214 hsa-miR-3132 1 0 0
chr6:36685990|36686214 hsa-miR-3138 1 1 0
chr6:36685990|36686214 hsa-miR-3646 0 1 0
chr6:36685990|36686214 hsa-miR-3916 1 0 0
chr6:36685990|36686214 hsa-miR-4428 1 1 0
chr6:36685990|36686214 hsa-miR-4442 1 0 0
chr6:36685990|36686214 hsa-miR-4462 1 0 0
chr6:36685990|36686214 hsa-miR-4510 0 1 0
chr6:36685990|36686214 hsa-miR-4533 1 0 0
chr6:36685990|36686214 hsa-miR-4644 1 1 0
chr6:36685990|36686214 hsa-miR-4689 1 0 0
chr6:36685990|36686214 hsa-miR-4706 1 0 0
chr6:36685990|36686214 hsa-miR-4739 1 1 0
chr6:36685990|36686214 hsa-miR-5703 1 0 0
chr6:36685990|36686214 hsa-miR-5739 1 0 0
chr6:36685990|36686214 hsa-miR-6075 0 1 0
chr6:36685990|36686214 hsa-miR-6090 1 0 0
chr6:36685990|36686214 hsa-miR-6124 1 1 0
chr6:36685990|36686214 hsa-miR-6127 1 0 0
chr6:36685990|36686214 hsa-miR-6133 1 0 0
chr6:36685990|36686214 hsa-miR-8085 1 1 0
chr6:36685990|36686214 hsa-miR-105-5p 0 1 0
chr6:36685990|36686214 hsa-miR-4433b-3p 1 0 0
chr6:36685990|36686214 hsa-miR-6734-5p 1 0 0
chr6:36685990|36686214 hsa-miR-7106-5p 1 1 0
chr6:36685990|36686214 hsa-miR-6825-5p 1 1 0
chr6:36685990|36686214 hsa-miR-6894-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6799-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6510-5p 1 0 0
chr6:36685990|36686214 hsa-miR-766-5p 1 1 0
chr6:36685990|36686214 hsa-miR-6804-5p 1 0 0
chr6:36685990|36686214 hsa-miR-5187-5p 1 1 0
chr6:36685990|36686214 hsa-miR-6880-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6746-5p 1 1 0
chr6:36685990|36686214 hsa-miR-4474-3p 1 0 0
chr6:36685990|36686214 hsa-miR-6806-5p 1 0 0
chr6:36685990|36686214 hsa-miR-197-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6742-5p 1 0 0
chr6:36685990|36686214 hsa-miR-3180-3p 1 0 0
chr6:36685990|36686214 hsa-miR-6748-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6732-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6798-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6810-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6735-3p 1 0 0
chr6:36685990|36686214 hsa-miR-6786-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6835-5p 1 0 0
chr6:36685990|36686214 hsa-miR-7109-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6771-5p 1 0 0
chr6:36685990|36686214 hsa-miR-4732-5p 1 0 0
chr6:36685990|36686214 hsa-miR-149-3p 1 0 0
chr6:36685990|36686214 hsa-miR-7843-3p 0 1 0
chr6:36685990|36686214 hsa-miR-3191-3p 1 0 0
chr6:36685990|36686214 hsa-miR-1225-5p 0 1 0
chr6:36685990|36686214 hsa-miR-508-5p 0 1 0
chr6:36685990|36686214 hsa-miR-6832-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6800-3p 0 1 0
chr6:36685990|36686214 hsa-miR-6841-5p 0 1 0
chr6:36685990|36686214 hsa-miR-1207-5p 1 0 0
chr6:36685990|36686214 hsa-miR-1233-5p 1 0 0
chr6:36685990|36686214 hsa-miR-4763-3p 1 0 0
chr6:36685990|36686214 hsa-miR-6778-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6787-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6870-5p 1 0 0
chr6:36685990|36686214 hsa-miR-1343-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6737-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6756-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6769a-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6803-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6819-5p 1 0 0
chr6:36685990|36686214 hsa-miR-11181-3p 1 1 0
chr6:36685990|36686214 hsa-miR-1249-5p 1 1 0
chr6:36685990|36686214 hsa-miR-6751-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6763-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6780a-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6797-5p 1 1 0
chr6:36685990|36686214 hsa-miR-7111-5p 1 1 0
chr6:36685990|36686214 hsa-miR-4728-5p 1 1 0
chr6:36685990|36686214 hsa-miR-5196-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6780b-5p 1 0 0
chr6:36685990|36686214 hsa-miR-1237-5p 1 0 0
chr6:36685990|36686214 hsa-miR-328-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6729-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6738-5p 1 0 0
chr6:36685990|36686214 hsa-miR-675-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6795-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6858-5p 1 1 0
chr6:36685990|36686214 hsa-miR-3085-5p 1 1 0
chr6:36685990|36686214 hsa-miR-6731-5p 0 1 0
chr6:36685990|36686214 hsa-miR-6758-5p 1 1 0
chr6:36685990|36686214 hsa-miR-6856-5p 0 1 0
chr6:36685990|36686214 hsa-miR-3173-3p 1 1 0
chr6:36685990|36686214 hsa-miR-4747-5p 0 1 0
chr6:36685990|36686214 hsa-miR-6891-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6750-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6785-5p 1 0 0
chr6:36685990|36686214 hsa-miR-4667-5p 1 0 0
chr6:36685990|36686214 hsa-miR-3689d 1 0 0
chr6:36685990|36686214 hsa-miR-518d-5p 0 1 0
chr6:36685990|36686214 hsa-miR-518f-5p 0 1 0
chr6:36685990|36686214 hsa-miR-520c-5p 0 1 0
chr6:36685990|36686214 hsa-miR-526a-5p 0 1 0
chr6:36685990|36686214 hsa-miR-6862-3p 0 1 0
chr6:36685990|36686214 hsa-miR-6823-3p 0 1 0
chr6:36685990|36686214 hsa-miR-4756-5p 1 0 0
chr6:36685990|36686214 hsa-miR-6859-5p 1 1 0
chr6:36685990|36686214 hsa-miR-6500-5p 0 1 0
chr6:36685990|36686214 hsa-miR-7157-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:36685990|36686214
ORF Type ORF1
Protein Length 59
Nucleotide Length 177
Protein Sequence MKYYLKPPHPVFSFSSLPEVGWAGFMPATSSSPLVRWVVPSGGVWLLPIAVTGGYEIHP
Nucleotide Sequence ATGAAATACTATTTAAAGCCTCCTCATCCCGTGTTCTCCTTTTCCTCTCTCCCGGAGGTTGGGTGGGCCGGCTTCATGCCAGCTACTTCCTCCTCCCCACTTGTCCGCTGGGTGGTACCCTCTGGAGGGGTGTGGCTCCTTCCCATCGCTGTCACAGGCGGTTATGAAATTCACCCC
CircID chr6:36685990|36686214
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MGGPASCQLLPPPHLSAGWYPLEGCGSFPSLSQAVMKFT
Nucleotide Sequence TTGGGTGGGCCGGCTTCATGCCAGCTACTTCCTCCTCCCCACTTGTCCGCTGGGTGGTACCCTCTGGAGGGGTGTGGCTCCTTCCCATCGCTGTCACAGGCGGTTATGAAATTCACC
CircID chr6:36685990|36686214
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MGRSHTPPEGTTQRTSGEEEVAGMKPAHPTSGREEKENTG
Nucleotide Sequence ATGGGAAGGAGCCACACCCCTCCAGAGGGTACCACCCAGCGGACAAGTGGGGAGGAGGAAGTAGCTGGCATGAAGCCGGCCCACCCAACCTCCGGGAGAGAGGAAAAGGAGAACACGGGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab