CircRNA Information

General Information
circRNA Basic Information
CircID chr6:36923484|36923699
Strand -
CircType exon
Host Gene ENSG00000198663.15;
Algorism CIRI2;
Sequence CAGGTTGAAAGGGGAAAAATAAAAACAAAAACGATGAAACTGCTTTCTGGGGGTTGGTTACTTAGTTACCTGCCCTTTGCATGCATGTGTGAACCAGCTGTGAGCTGCAAGGCAGTGGCCAGAGCCTCGCCCTCCTGACTCTTCCTGCAGGTGGCTCAGGAAGGATTCAGCCTGGCCACTTGGCTAGGACTCTGCCAGCACCCATCTGAGACTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:36923484|36923699 hsa-miR-377-5p 0 0 1
chr6:36923484|36923699 hsa-miR-377-3p 0 0 1
chr6:36923484|36923699 hsa-miR-527 0 0 1
chr6:36923484|36923699 hsa-miR-588 0 0 1
chr6:36923484|36923699 hsa-miR-622 0 0 1
chr6:36923484|36923699 hsa-miR-1301-5p 0 0 1
chr6:36923484|36923699 hsa-miR-1301-3p 0 0 1
chr6:36923484|36923699 hsa-miR-760 0 1 1
chr6:36923484|36923699 hsa-miR-1200 0 1 1
chr6:36923484|36923699 hsa-miR-1205 0 0 1
chr6:36923484|36923699 hsa-miR-1286 0 0 1
chr6:36923484|36923699 hsa-miR-1305 0 0 1
chr6:36923484|36923699 hsa-miR-361-3p 0 0 1
chr6:36923484|36923699 hsa-miR-1207-3p 0 0 1
chr6:36923484|36923699 hsa-miR-518a-5p 0 0 1
chr6:36923484|36923699 hsa-miR-500 0 0 1
chr6:36923484|36923699 hsa-miR-765 0 1 0
chr6:36923484|36923699 hsa-miR-665 0 1 0
chr6:36923484|36923699 hsa-miR-1183 1 0 0
chr6:36923484|36923699 hsa-miR-4259 1 0 0
chr6:36923484|36923699 hsa-miR-4480 0 1 0
chr6:36923484|36923699 hsa-miR-4488 1 0 0
chr6:36923484|36923699 hsa-miR-4498 1 0 0
chr6:36923484|36923699 hsa-miR-4734 1 0 0
chr6:36923484|36923699 hsa-miR-4736 0 1 0
chr6:36923484|36923699 hsa-miR-5047 0 1 0
chr6:36923484|36923699 hsa-miR-8085 1 0 0
chr6:36923484|36923699 hsa-miR-25-5p 0 1 0
chr6:36923484|36923699 hsa-miR-6807-5p 0 1 0
chr6:36923484|36923699 hsa-miR-3677-5p 0 1 0
chr6:36923484|36923699 hsa-miR-6741-5p 1 1 0
chr6:36923484|36923699 hsa-miR-6759-5p 1 0 0
chr6:36923484|36923699 hsa-miR-6721-5p 0 1 0
chr6:36923484|36923699 hsa-miR-8069 1 0 0
chr6:36923484|36923699 hsa-miR-6772-5p 1 0 0
chr6:36923484|36923699 hsa-miR-2467-5p 1 1 0
chr6:36923484|36923699 hsa-miR-5187-3p 0 1 0
chr6:36923484|36923699 hsa-miR-6771-5p 1 0 0
chr6:36923484|36923699 hsa-miR-4717-3p 1 0 0
chr6:36923484|36923699 hsa-miR-1250-5p 1 0 0
chr6:36923484|36923699 hsa-miR-584-3p 1 0 0
chr6:36923484|36923699 hsa-miR-500a-5p 0 1 0
chr6:36923484|36923699 hsa-miR-744-5p 1 0 0
chr6:36923484|36923699 hsa-miR-3670 0 1 0
chr6:36923484|36923699 hsa-miR-6890-3p 0 1 0
chr6:36923484|36923699 hsa-miR-196a-5p 0 1 0
chr6:36923484|36923699 hsa-miR-1207-5p 1 0 0
chr6:36923484|36923699 hsa-miR-6769b-5p 1 0 0
chr6:36923484|36923699 hsa-miR-6726-5p 1 0 0
chr6:36923484|36923699 hsa-miR-6769a-5p 1 0 0
chr6:36923484|36923699 hsa-miR-6879-5p 0 1 0
chr6:36923484|36923699 hsa-miR-4649-5p 0 1 0
chr6:36923484|36923699 hsa-miR-6729-5p 1 0 0
chr6:36923484|36923699 hsa-miR-6735-5p 0 1 0
chr6:36923484|36923699 hsa-miR-6848-5p 1 0 0
chr6:36923484|36923699 hsa-miR-4436b-3p 0 1 0
chr6:36923484|36923699 hsa-miR-6736-5p 1 0 0
chr6:36923484|36923699 hsa-miR-324-3p 0 1 0
chr6:36923484|36923699 hsa-miR-9851-5p 0 1 0
chr6:36923484|36923699 hsa-miR-5006-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:36923484|36923699
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MKLLSGGWLLSYLPFACMCEPAVSCKAVARASPS
Nucleotide Sequence ATGAAACTGCTTTCTGGGGGTTGGTTACTTAGTTACCTGCCCTTTGCATGCATGTGTGAACCAGCTGTGAGCTGCAAGGCAGTGGCCAGAGCCTCGCCCTCCTGA
CircID chr6:36923484|36923699
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MQGSGQSLALLTLPAGGSGRIQPGHLARTLPAPI
Nucleotide Sequence CTGCAAGGCAGTGGCCAGAGCCTCGCCCTCCTGACTCTTCCTGCAGGTGGCTCAGGAAGGATTCAGCCTGGCCACTTGGCTAGGACTCTGCCAGCACCCATCTGA
CircID chr6:36923484|36923699
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MSHLQEESGGRGSGHCLAAHSWFTHACKGQVTK
Nucleotide Sequence CTGAGCCACCTGCAGGAAGAGTCAGGAGGGCGAGGCTCTGGCCACTGCCTTGCAGCTCACAGCTGGTTCACACATGCATGCAAAGGGCAGGTAACTAAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab