CircRNA Information

General Information
circRNA Basic Information
CircID chr6:38153103|38153265
Strand +
CircType exon
Host Gene ENSG00000156639.10;
Algorism CIRI2;
Sequence TCCCAATATAGAAATCTGGCTGCAGAGGCCAGTGTGCAGACCCAGCCACCGCGCTGTGCTGCCATTCGCCACATCTGGTCCGTGCCAGATCCCTGCACTGGCGAATGGCAGACCAGAGCCGGCGGAGGCGGGGCACTCTGGCTGCTTCTCGTGACCTTGGATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:38153103|38153265 hsa-miR-148a-5p 0 0 1
chr6:38153103|38153265 hsa-miR-148a-3p 0 0 1
chr6:38153103|38153265 hsa-miR-152-5p 0 0 1
chr6:38153103|38153265 hsa-miR-152-3p 0 0 1
chr6:38153103|38153265 hsa-miR-148b-5p 0 0 1
chr6:38153103|38153265 hsa-miR-148b-3p 0 0 1
chr6:38153103|38153265 hsa-miR-346 0 0 1
chr6:38153103|38153265 hsa-miR-193b-5p 0 0 1
chr6:38153103|38153265 hsa-miR-193b-3p 0 0 1
chr6:38153103|38153265 hsa-miR-564 0 0 1
chr6:38153103|38153265 hsa-miR-760 0 1 1
chr6:38153103|38153265 hsa-miR-1205 0 0 1
chr6:38153103|38153265 hsa-miR-1281 0 1 1
chr6:38153103|38153265 hsa-miR-1825 0 0 1
chr6:38153103|38153265 hsa-miR-885-3p 0 1 1
chr6:38153103|38153265 hsa-miR-193a-5p 0 0 1
chr6:38153103|38153265 hsa-miR-1184 0 0 1
chr6:38153103|38153265 hsa-miR-576-3p 0 1 1
chr6:38153103|38153265 hsa-miR-193a-3p 0 0 1
chr6:38153103|38153265 hsa-miR-638 1 0 0
chr6:38153103|38153265 hsa-miR-661 1 0 0
chr6:38153103|38153265 hsa-miR-762 1 0 0
chr6:38153103|38153265 hsa-miR-940 1 0 0
chr6:38153103|38153265 hsa-miR-1469 1 0 0
chr6:38153103|38153265 hsa-miR-4425 1 0 0
chr6:38153103|38153265 hsa-miR-4527 0 1 0
chr6:38153103|38153265 hsa-miR-4706 1 0 0
chr6:38153103|38153265 hsa-miR-7703 1 0 0
chr6:38153103|38153265 hsa-miR-6836-3p 0 1 0
chr6:38153103|38153265 hsa-miR-6842-3p 0 1 0
chr6:38153103|38153265 hsa-miR-6806-5p 1 0 0
chr6:38153103|38153265 hsa-miR-3663-5p 0 1 0
chr6:38153103|38153265 hsa-miR-423-3p 1 0 0
chr6:38153103|38153265 hsa-miR-1909-5p 0 1 0
chr6:38153103|38153265 hsa-miR-6757-3p 0 1 0
chr6:38153103|38153265 hsa-miR-1908-5p 1 0 0
chr6:38153103|38153265 hsa-miR-3126-3p 0 1 0
chr6:38153103|38153265 hsa-miR-4727-5p 0 1 0
chr6:38153103|38153265 hsa-miR-1207-5p 1 0 0
chr6:38153103|38153265 hsa-miR-6754-5p 1 0 0
chr6:38153103|38153265 hsa-miR-6722-3p 1 1 0
chr6:38153103|38153265 hsa-miR-6836-5p 1 0 0
chr6:38153103|38153265 hsa-miR-1909-3p 1 0 0
chr6:38153103|38153265 hsa-miR-4749-5p 1 0 0
chr6:38153103|38153265 hsa-miR-6848-5p 1 0 0
chr6:38153103|38153265 hsa-miR-7107-3p 0 1 0
chr6:38153103|38153265 hsa-miR-4757-5p 0 1 0
chr6:38153103|38153265 hsa-miR-6744-3p 0 1 0
chr6:38153103|38153265 hsa-miR-6764-5p 1 0 0
chr6:38153103|38153265 hsa-miR-6824-3p 0 1 0
chr6:38153103|38153265 hsa-miR-6503-5p 0 1 0
chr6:38153103|38153265 hsa-miR-6764-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:38153103|38153265
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MAAEASVQTQPPRCAAIRHIWSVPDPCTGEWQTRAGGGGALWLLLVTLD
Nucleotide Sequence CTGGCTGCAGAGGCCAGTGTGCAGACCCAGCCACCGCGCTGTGCTGCCATTCGCCACATCTGGTCCGTGCCAGATCCCTGCACTGGCGAATGGCAGACCAGAGCCGGCGGAGGCGGGGCACTCTGGCTGCTTCTCGTGACCTTGGAT
CircID chr6:38153103|38153265
ORF Type ORF2
Protein Length 44
Nucleotide Length 135
Protein Sequence MQRPVCRPSHRAVLPFATSGPCQIPALANGRPEPAEAGHSGCFS
Nucleotide Sequence CTGCAGAGGCCAGTGTGCAGACCCAGCCACCGCGCTGTGCTGCCATTCGCCACATCTGGTCCGTGCCAGATCCCTGCACTGGCGAATGGCAGACCAGAGCCGGCGGAGGCGGGGCACTCTGGCTGCTTCTCGTGA
CircID chr6:38153103|38153265
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MCCHSPHLVRARSLHWRMADQSRRRRGTLAASRDLG
Nucleotide Sequence CTGTGCTGCCATTCGCCACATCTGGTCCGTGCCAGATCCCTGCACTGGCGAATGGCAGACCAGAGCCGGCGGAGGCGGGGCACTCTGGCTGCTTCTCGTGACCTTGGA
CircID chr6:38153103|38153265
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MARTRCGEWQHSAVAGSAHWPLQPDFYIG
Nucleotide Sequence CTGGCACGGACCAGATGTGGCGAATGGCAGCACAGCGCGGTGGCTGGGTCTGCACACTGGCCTCTGCAGCCAGATTTCTATATTGGG
CircID chr6:38153103|38153265
ORF Type ORF5
Protein Length 37
Nucleotide Length 111
Protein Sequence MPFASAGIWHGPDVANGSTARWLGLHTGLCSQISILG
Nucleotide Sequence CTGCCATTCGCCAGTGCAGGGATCTGGCACGGACCAGATGTGGCGAATGGCAGCACAGCGCGGTGGCTGGGTCTGCACACTGGCCTCTGCAGCCAGATTTCTATATTGGGA
CircID chr6:38153103|38153265
ORF Type ORF6
Protein Length 38
Nucleotide Length 114
Protein Sequence MVCHSPVQGSGTDQMWRMAAQRGGWVCTLASAARFLYW
Nucleotide Sequence CTGGTCTGCCATTCGCCAGTGCAGGGATCTGGCACGGACCAGATGTGGCGAATGGCAGCACAGCGCGGTGGCTGGGTCTGCACACTGGCCTCTGCAGCCAGATTTCTATATTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab