CircRNA Information

General Information
circRNA Basic Information
CircID chr6:39312626|39312777
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGTGAGGGAGGTGAGACAAATGAATACGGGTAAAGTACCAGCAACAGTGCTTGGCACACGATAAGTGCTGCACAGAGGCATTTACTGTTATTATAATCACCATCATAGCCATCTCCCTGGGCCCAGGCTGCTTGTAGTCGAAGTTCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:39312626|39312777 hsa-miR-99a-5p 0 0 1
chr6:39312626|39312777 hsa-miR-99a-3p 0 0 1
chr6:39312626|39312777 hsa-miR-100-5p 0 0 1
chr6:39312626|39312777 hsa-miR-100-3p 0 0 1
chr6:39312626|39312777 hsa-miR-107 0 0 1
chr6:39312626|39312777 hsa-miR-212-5p 0 0 1
chr6:39312626|39312777 hsa-miR-212-3p 0 0 1
chr6:39312626|39312777 hsa-miR-132-5p 0 0 1
chr6:39312626|39312777 hsa-miR-132-3p 0 0 1
chr6:39312626|39312777 hsa-miR-99b-5p 0 0 1
chr6:39312626|39312777 hsa-miR-99b-3p 0 0 1
chr6:39312626|39312777 hsa-miR-374a-5p 0 0 1
chr6:39312626|39312777 hsa-miR-374a-3p 0 0 1
chr6:39312626|39312777 hsa-miR-579-5p 0 0 1
chr6:39312626|39312777 hsa-miR-579-3p 0 0 1
chr6:39312626|39312777 hsa-miR-661 1 1 1
chr6:39312626|39312777 hsa-miR-374b-5p 0 0 1
chr6:39312626|39312777 hsa-miR-374b-3p 0 0 1
chr6:39312626|39312777 hsa-miR-1227-5p 0 0 1
chr6:39312626|39312777 hsa-miR-1227-3p 0 0 1
chr6:39312626|39312777 hsa-miR-1229-5p 0 0 1
chr6:39312626|39312777 hsa-miR-1229-3p 0 0 1
chr6:39312626|39312777 hsa-miR-1208 0 0 1
chr6:39312626|39312777 hsa-miR-1272 0 0 1
chr6:39312626|39312777 hsa-miR-1322 0 0 1
chr6:39312626|39312777 hsa-miR-296-5p 0 0 1
chr6:39312626|39312777 hsa-miR-369-3p 0 0 1
chr6:39312626|39312777 hsa-miR-103 0 0 1
chr6:39312626|39312777 hsa-miR-138 0 0 1
chr6:39312626|39312777 hsa-miR-664 0 0 1
chr6:39312626|39312777 hsa-miR-638 1 0 0
chr6:39312626|39312777 hsa-miR-762 1 0 0
chr6:39312626|39312777 hsa-miR-1321 1 0 0
chr6:39312626|39312777 hsa-miR-1538 1 0 0
chr6:39312626|39312777 hsa-miR-711 1 0 0
chr6:39312626|39312777 hsa-miR-4281 1 0 0
chr6:39312626|39312777 hsa-miR-3945 1 0 0
chr6:39312626|39312777 hsa-miR-4437 1 0 0
chr6:39312626|39312777 hsa-miR-4465 1 0 0
chr6:39312626|39312777 hsa-miR-3689c 1 0 0
chr6:39312626|39312777 hsa-miR-4518 1 1 0
chr6:39312626|39312777 hsa-miR-4525 1 0 0
chr6:39312626|39312777 hsa-miR-4647 1 0 0
chr6:39312626|39312777 hsa-miR-4656 1 0 0
chr6:39312626|39312777 hsa-miR-4674 1 0 0
chr6:39312626|39312777 hsa-miR-4675 1 0 0
chr6:39312626|39312777 hsa-miR-4692 1 1 0
chr6:39312626|39312777 hsa-miR-4739 1 0 0
chr6:39312626|39312777 hsa-miR-6075 1 0 0
chr6:39312626|39312777 hsa-miR-6860 1 0 0
chr6:39312626|39312777 hsa-miR-7974 1 0 0
chr6:39312626|39312777 hsa-miR-8078 1 0 0
chr6:39312626|39312777 hsa-miR-8085 1 0 0
chr6:39312626|39312777 hsa-miR-11400 1 0 0
chr6:39312626|39312777 hsa-miR-12128 1 0 0
chr6:39312626|39312777 hsa-miR-6799-5p 1 0 0
chr6:39312626|39312777 hsa-miR-3064-5p 1 0 0
chr6:39312626|39312777 hsa-miR-4655-5p 1 0 0
chr6:39312626|39312777 hsa-miR-8069 1 0 0
chr6:39312626|39312777 hsa-miR-6776-5p 1 0 0
chr6:39312626|39312777 hsa-miR-185-3p 1 0 0
chr6:39312626|39312777 hsa-miR-6798-5p 1 0 0
chr6:39312626|39312777 hsa-miR-6760-5p 1 1 0
chr6:39312626|39312777 hsa-miR-5088-5p 1 0 0
chr6:39312626|39312777 hsa-miR-4640-5p 1 0 0
chr6:39312626|39312777 hsa-miR-3162-5p 1 0 0
chr6:39312626|39312777 hsa-miR-1306-5p 0 1 0
chr6:39312626|39312777 hsa-miR-6878-5p 1 0 0
chr6:39312626|39312777 hsa-miR-5010-5p 1 0 0
chr6:39312626|39312777 hsa-miR-664b-5p 1 0 0
chr6:39312626|39312777 hsa-miR-7113-5p 1 1 0
chr6:39312626|39312777 hsa-miR-6792-5p 1 0 0
chr6:39312626|39312777 hsa-miR-367-5p 0 1 0
chr6:39312626|39312777 hsa-miR-3689b-3p 1 0 0
chr6:39312626|39312777 hsa-miR-6870-5p 1 0 0
chr6:39312626|39312777 hsa-miR-6754-5p 1 1 0
chr6:39312626|39312777 hsa-miR-6851-5p 1 0 0
chr6:39312626|39312777 hsa-miR-7107-5p 1 0 0
chr6:39312626|39312777 hsa-miR-6751-5p 1 0 0
chr6:39312626|39312777 hsa-miR-1915-3p 1 0 0
chr6:39312626|39312777 hsa-miR-5189-5p 1 1 0
chr6:39312626|39312777 hsa-miR-6780b-5p 1 0 0
chr6:39312626|39312777 hsa-miR-10392-5p 1 0 0
chr6:39312626|39312777 hsa-miR-3689a-3p 1 0 0
chr6:39312626|39312777 hsa-miR-6777-5p 1 0 0
chr6:39312626|39312777 hsa-miR-6794-5p 1 0 0
chr6:39312626|39312777 hsa-miR-6848-5p 1 0 0
chr6:39312626|39312777 hsa-miR-939-5p 1 0 0
chr6:39312626|39312777 hsa-miR-6731-5p 1 0 0
chr6:39312626|39312777 hsa-miR-6773-5p 1 1 0
chr6:39312626|39312777 hsa-miR-7151-3p 1 0 0
chr6:39312626|39312777 hsa-miR-4716-3p 1 0 0
chr6:39312626|39312777 hsa-miR-6785-5p 1 0 0
chr6:39312626|39312777 hsa-miR-6724-5p 1 1 0
chr6:39312626|39312777 hsa-miR-10400-3p 1 0 0
chr6:39312626|39312777 hsa-miR-6837-5p 1 0 0
chr6:39312626|39312777 hsa-miR-6766-3p 1 0 0
chr6:39312626|39312777 hsa-miR-550a-3p 0 1 0
chr6:39312626|39312777 hsa-miR-664b-3p 0 1 0
chr6:39312626|39312777 hsa-miR-664a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:39312626|39312777
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MAHDKCCTEAFTVIIITIIAISLGPGCL
Nucleotide Sequence TTGGCACACGATAAGTGCTGCACAGAGGCATTTACTGTTATTATAATCACCATCATAGCCATCTCCCTGGGCCCAGGCTGCTTGTAG
CircID chr6:39312626|39312777
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MHRGIYCYYNHHHSHLPGPRLLVVEVHH
Nucleotide Sequence CTGCACAGAGGCATTTACTGTTATTATAATCACCATCATAGCCATCTCCCTGGGCCCAGGCTGCTTGTAGTCGAAGTTCACCAC
CircID chr6:39312626|39312777
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MAMMVIIITVNASVQHLSCAKHCCWYFTRIHLSHLPH
Nucleotide Sequence ATGGCTATGATGGTGATTATAATAACAGTAAATGCCTCTGTGCAGCACTTATCGTGTGCCAAGCACTGTTGCTGGTACTTTACCCGTATTCATTTGTCTCACCTCCCTCAC
CircID chr6:39312626|39312777
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MPLCSTYRVPSTVAGTLPVFICLTSLT
Nucleotide Sequence ATGCCTCTGTGCAGCACTTATCGTGTGCCAAGCACTGTTGCTGGTACTTTACCCGTATTCATTTGTCTCACCTCCCTCACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab