CircRNA Information

General Information
circRNA Basic Information
CircID chr6:41208727|41208909
Strand -
CircType exon
Host Gene ENSG00000184106.7;
Algorism CIRI2;
Sequence CACTAACAAACAGGGAAAATGTGAGGCATCCTGGAGACCTGCTGAGGTGGGGCTGAGAGAACCACGGAGTGCTGGAGAGGAGCCCGGGCACAGCTGAAGATGCTGAGCTGAGCGTTGACCCGGATGCAGAAACCCCCACCCCAGGTCTTTCCAATGGCGAAAGTCAGGGCAGGGGAAGTAGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:41208727|41208909 hsa-miR-23a-5p 0 0 1
chr6:41208727|41208909 hsa-miR-23a-3p 0 0 1
chr6:41208727|41208909 hsa-miR-214-5p 0 0 1
chr6:41208727|41208909 hsa-miR-214-3p 0 0 1
chr6:41208727|41208909 hsa-miR-23b-5p 0 0 1
chr6:41208727|41208909 hsa-miR-23b-3p 0 0 1
chr6:41208727|41208909 hsa-miR-608 1 0 1
chr6:41208727|41208909 hsa-miR-631 0 0 1
chr6:41208727|41208909 hsa-miR-766-5p 0 0 1
chr6:41208727|41208909 hsa-miR-766-3p 0 0 1
chr6:41208727|41208909 hsa-miR-874-5p 0 0 1
chr6:41208727|41208909 hsa-miR-874-3p 0 0 1
chr6:41208727|41208909 hsa-miR-665 0 0 1
chr6:41208727|41208909 hsa-miR-922 0 0 1
chr6:41208727|41208909 hsa-miR-324-5p 0 0 1
chr6:41208727|41208909 hsa-miR-146b-3p 0 0 1
chr6:41208727|41208909 hsa-miR-339-5p 0 0 1
chr6:41208727|41208909 hsa-miR-1224-3p 0 1 1
chr6:41208727|41208909 hsa-miR-1207-3p 0 0 1
chr6:41208727|41208909 hsa-miR-331-3p 0 0 1
chr6:41208727|41208909 hsa-miR-338-3p 0 0 1
chr6:41208727|41208909 hsa-miR-342-5p 0 0 1
chr6:41208727|41208909 hsa-miR-574-3p 0 0 1
chr6:41208727|41208909 hsa-miR-1274a 0 0 1
chr6:41208727|41208909 hsa-miR-1274b 0 0 1
chr6:41208727|41208909 hsa-miR-544 0 0 1
chr6:41208727|41208909 hsa-miR-326 1 0 0
chr6:41208727|41208909 hsa-miR-634 1 0 0
chr6:41208727|41208909 hsa-miR-637 1 0 0
chr6:41208727|41208909 hsa-miR-661 1 1 0
chr6:41208727|41208909 hsa-miR-762 1 0 0
chr6:41208727|41208909 hsa-miR-1538 1 0 0
chr6:41208727|41208909 hsa-miR-4268 1 1 0
chr6:41208727|41208909 hsa-miR-3615 1 1 0
chr6:41208727|41208909 hsa-miR-4447 0 1 0
chr6:41208727|41208909 hsa-miR-3978 1 0 0
chr6:41208727|41208909 hsa-miR-4651 1 0 0
chr6:41208727|41208909 hsa-miR-5193 1 0 0
chr6:41208727|41208909 hsa-miR-5572 1 0 0
chr6:41208727|41208909 hsa-miR-7976 0 1 0
chr6:41208727|41208909 hsa-miR-203a-5p 0 1 0
chr6:41208727|41208909 hsa-miR-6749-3p 1 0 0
chr6:41208727|41208909 hsa-miR-92a-2-5p 0 1 0
chr6:41208727|41208909 hsa-miR-4726-3p 1 0 0
chr6:41208727|41208909 hsa-miR-149-5p 1 0 0
chr6:41208727|41208909 hsa-miR-6720-5p 1 0 0
chr6:41208727|41208909 hsa-miR-6892-3p 1 0 0
chr6:41208727|41208909 hsa-miR-6854-5p 0 1 0
chr6:41208727|41208909 hsa-miR-24-3p 0 1 0
chr6:41208727|41208909 hsa-miR-770-5p 1 0 0
chr6:41208727|41208909 hsa-miR-3189-5p 1 0 0
chr6:41208727|41208909 hsa-miR-6787-3p 1 1 0
chr6:41208727|41208909 hsa-miR-6845-3p 1 0 0
chr6:41208727|41208909 hsa-miR-423-3p 1 0 0
chr6:41208727|41208909 hsa-miR-877-3p 1 0 0
chr6:41208727|41208909 hsa-miR-6782-5p 1 0 0
chr6:41208727|41208909 hsa-miR-4436b-5p 1 1 0
chr6:41208727|41208909 hsa-miR-6815-3p 1 0 0
chr6:41208727|41208909 hsa-miR-939-3p 1 0 0
chr6:41208727|41208909 hsa-miR-6763-3p 1 0 0
chr6:41208727|41208909 hsa-miR-3944-3p 1 0 0
chr6:41208727|41208909 hsa-miR-7111-3p 1 1 0
chr6:41208727|41208909 hsa-miR-4787-5p 1 0 0
chr6:41208727|41208909 hsa-miR-6769a-3p 1 0 0
chr6:41208727|41208909 hsa-miR-6811-3p 1 0 0
chr6:41208727|41208909 hsa-miR-6889-3p 0 1 0
chr6:41208727|41208909 hsa-miR-4732-3p 0 1 0
chr6:41208727|41208909 hsa-miR-4758-3p 0 1 0
chr6:41208727|41208909 hsa-miR-597-3p 0 1 0
chr6:41208727|41208909 hsa-miR-383-3p 0 1 0
chr6:41208727|41208909 hsa-miR-6752-3p 0 1 0
chr6:41208727|41208909 hsa-miR-3605-3p 0 1 0
chr6:41208727|41208909 hsa-miR-1914-5p 1 1 0
chr6:41208727|41208909 hsa-miR-2277-5p 1 0 0
chr6:41208727|41208909 hsa-miR-6800-3p 1 0 0
chr6:41208727|41208909 hsa-miR-4738-5p 1 0 0
chr6:41208727|41208909 hsa-miR-6737-5p 0 1 0
chr6:41208727|41208909 hsa-miR-6756-5p 1 1 0
chr6:41208727|41208909 hsa-miR-6803-5p 1 0 0
chr6:41208727|41208909 hsa-miR-6819-5p 0 1 0
chr6:41208727|41208909 hsa-miR-7107-5p 1 0 0
chr6:41208727|41208909 hsa-miR-6751-5p 1 0 0
chr6:41208727|41208909 hsa-miR-4472 0 1 0
chr6:41208727|41208909 hsa-miR-10398-5p 1 0 0
chr6:41208727|41208909 hsa-miR-2682-3p 1 0 0
chr6:41208727|41208909 hsa-miR-6801-3p 0 1 0
chr6:41208727|41208909 hsa-miR-6810-3p 0 1 0
chr6:41208727|41208909 hsa-miR-10392-3p 1 1 0
chr6:41208727|41208909 hsa-miR-3059-5p 1 0 0
chr6:41208727|41208909 hsa-miR-4723-3p 1 0 0
chr6:41208727|41208909 hsa-miR-6529-3p 0 1 0
chr6:41208727|41208909 hsa-miR-6769b-3p 1 0 0
chr6:41208727|41208909 hsa-miR-6783-3p 1 0 0
chr6:41208727|41208909 hsa-miR-4768-5p 0 1 0
chr6:41208727|41208909 hsa-miR-3619-5p 0 1 0
chr6:41208727|41208909 hsa-miR-6833-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:41208727|41208909
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MERSPGTAEDAELSVDPDAETPTPGLSNGESQGRGSR
Nucleotide Sequence CTGGAGAGGAGCCCGGGCACAGCTGAAGATGCTGAGCTGAGCGTTGACCCGGATGCAGAAACCCCCACCCCAGGTCTTTCCAATGGCGAAAGTCAGGGCAGGGGAAGTAGA
CircID chr6:41208727|41208909
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MGWGFLHPGQRSAQHLQLCPGSSPALRGSLSPTSAGLQDASHFPCLLV
Nucleotide Sequence CTGGGGTGGGGGTTTCTGCATCCGGGTCAACGCTCAGCTCAGCATCTTCAGCTGTGCCCGGGCTCCTCTCCAGCACTCCGTGGTTCTCTCAGCCCCACCTCAGCAGGTCTCCAGGATGCCTCACATTTTCCCTGTTTGTTAGTG
CircID chr6:41208727|41208909
ORF Type ORF3
Protein Length 54
Nucleotide Length 165
Protein Sequence MTFAIGKTWGGGFCIRVNAQLSIFSCARAPLQHSVVLSAPPQQVSRMPHIFPVC
Nucleotide Sequence CTGACTTTCGCCATTGGAAAGACCTGGGGTGGGGGTTTCTGCATCCGGGTCAACGCTCAGCTCAGCATCTTCAGCTGTGCCCGGGCTCCTCTCCAGCACTCCGTGGTTCTCTCAGCCCCACCTCAGCAGGTCTCCAGGATGCCTCACATTTTCCCTGTTTGTTAG
CircID chr6:41208727|41208909
ORF Type ORF4
Protein Length 51
Nucleotide Length 153
Protein Sequence MERPGVGVSASGSTLSSASSAVPGLLSSTPWFSQPHLSRSPGCLTFSLFVS
Nucleotide Sequence TTGGAAAGACCTGGGGTGGGGGTTTCTGCATCCGGGTCAACGCTCAGCTCAGCATCTTCAGCTGTGCCCGGGCTCCTCTCCAGCACTCCGTGGTTCTCTCAGCCCCACCTCAGCAGGTCTCCAGGATGCCTCACATTTTCCCTGTTTGTTAGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab