CircRNA Information

General Information
circRNA Basic Information
CircID chr6:41589834|41590067
Strand +
CircType exon
Host Gene ENSG00000137166.13;
Algorism CIRI2;
Sequence AGGGGCTGCGGCCGAGGTCGGGGGGTGCACGAGACCATCTGGGAATGAGTCTGCTGCAGAGACGGTCACCTTGGAGAATGAGGAGGAGCCGGGGACCGGGTTCAGCTGTGAGCAACGGGGAGGGTACTGAGACCAGTGCCCGAGGGTGGGGGTCCCGAGGCTCCAGGGTCTGTGGAAGGCTCTGGGAGGGGCGGGGAGGGGAGCAGCACTCACTGGCTGGCTGAAGGGCTTGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:41589834|41590067 hsa-miR-107 0 0 1
chr6:41589834|41590067 hsa-miR-517-5p 0 0 1
chr6:41589834|41590067 hsa-miR-517a-3p 0 0 1
chr6:41589834|41590067 hsa-miR-517b-3p 0 0 1
chr6:41589834|41590067 hsa-miR-517c-3p 0 0 1
chr6:41589834|41590067 hsa-miR-504-5p 0 0 1
chr6:41589834|41590067 hsa-miR-504-3p 0 0 1
chr6:41589834|41590067 hsa-miR-575 0 0 1
chr6:41589834|41590067 hsa-miR-593-5p 0 0 1
chr6:41589834|41590067 hsa-miR-593-3p 0 0 1
chr6:41589834|41590067 hsa-miR-922 0 0 1
chr6:41589834|41590067 hsa-miR-1178-5p 0 0 1
chr6:41589834|41590067 hsa-miR-1178-3p 0 0 1
chr6:41589834|41590067 hsa-miR-1205 0 0 1
chr6:41589834|41590067 hsa-miR-512-3p 0 0 1
chr6:41589834|41590067 hsa-miR-1184 1 1 1
chr6:41589834|41590067 hsa-miR-515-5p 0 0 1
chr6:41589834|41590067 hsa-miR-103 0 0 1
chr6:41589834|41590067 hsa-miR-129-3p 0 0 1
chr6:41589834|41590067 hsa-miR-484 1 0 0
chr6:41589834|41590067 hsa-miR-1470 1 0 0
chr6:41589834|41590067 hsa-miR-4308 0 1 0
chr6:41589834|41590067 hsa-miR-4254 0 1 0
chr6:41589834|41590067 hsa-miR-4268 0 1 0
chr6:41589834|41590067 hsa-miR-3972 1 0 0
chr6:41589834|41590067 hsa-miR-5193 0 1 0
chr6:41589834|41590067 hsa-miR-8079 1 0 0
chr6:41589834|41590067 hsa-miR-6749-3p 1 0 0
chr6:41589834|41590067 hsa-miR-4665-3p 0 1 0
chr6:41589834|41590067 hsa-miR-3157-5p 0 1 0
chr6:41589834|41590067 hsa-miR-1273h-3p 1 0 0
chr6:41589834|41590067 hsa-miR-4726-3p 1 0 0
chr6:41589834|41590067 hsa-miR-6836-3p 1 0 0
chr6:41589834|41590067 hsa-miR-149-5p 1 0 0
chr6:41589834|41590067 hsa-miR-6892-3p 1 0 0
chr6:41589834|41590067 hsa-miR-3692-3p 0 1 0
chr6:41589834|41590067 hsa-miR-6849-3p 1 0 0
chr6:41589834|41590067 hsa-miR-6845-3p 1 1 0
chr6:41589834|41590067 hsa-miR-6796-3p 1 0 0
chr6:41589834|41590067 hsa-miR-4725-5p 0 1 0
chr6:41589834|41590067 hsa-miR-4697-3p 1 1 0
chr6:41589834|41590067 hsa-miR-4655-3p 1 0 0
chr6:41589834|41590067 hsa-miR-6728-3p 1 0 0
chr6:41589834|41590067 hsa-miR-6735-3p 1 0 0
chr6:41589834|41590067 hsa-miR-6882-3p 1 0 0
chr6:41589834|41590067 hsa-miR-6858-3p 1 0 0
chr6:41589834|41590067 hsa-miR-6763-3p 0 1 0
chr6:41589834|41590067 hsa-miR-7108-3p 1 1 0
chr6:41589834|41590067 hsa-miR-1247-5p 1 0 0
chr6:41589834|41590067 hsa-miR-1909-5p 1 0 0
chr6:41589834|41590067 hsa-miR-1908-3p 0 1 0
chr6:41589834|41590067 hsa-miR-7113-3p 1 0 0
chr6:41589834|41590067 hsa-miR-3677-3p 1 0 0
chr6:41589834|41590067 hsa-miR-7111-3p 1 1 0
chr6:41589834|41590067 hsa-miR-6769a-3p 1 0 0
chr6:41589834|41590067 hsa-miR-194-3p 1 1 0
chr6:41589834|41590067 hsa-miR-4707-5p 1 1 0
chr6:41589834|41590067 hsa-miR-6743-3p 0 1 0
chr6:41589834|41590067 hsa-miR-7106-3p 1 0 0
chr6:41589834|41590067 hsa-miR-3944-5p 1 0 0
chr6:41589834|41590067 hsa-miR-3180-5p 1 0 0
chr6:41589834|41590067 hsa-miR-6887-3p 1 1 0
chr6:41589834|41590067 hsa-miR-6778-3p 0 1 0
chr6:41589834|41590067 hsa-miR-6752-3p 1 0 0
chr6:41589834|41590067 hsa-miR-3614-3p 0 1 0
chr6:41589834|41590067 hsa-miR-7848-3p 0 1 0
chr6:41589834|41590067 hsa-miR-6758-3p 0 1 0
chr6:41589834|41590067 hsa-miR-4761-5p 0 1 0
chr6:41589834|41590067 hsa-miR-6826-3p 0 1 0
chr6:41589834|41590067 hsa-miR-6886-3p 1 0 0
chr6:41589834|41590067 hsa-miR-4749-3p 1 1 0
chr6:41589834|41590067 hsa-miR-6859-3p 0 1 0
chr6:41589834|41590067 hsa-miR-1249-3p 1 0 0
chr6:41589834|41590067 hsa-miR-7158-5p 1 0 0
chr6:41589834|41590067 hsa-miR-6790-3p 0 1 0
chr6:41589834|41590067 hsa-miR-3127-3p 0 1 0
chr6:41589834|41590067 hsa-miR-4685-3p 1 0 0
chr6:41589834|41590067 hsa-miR-1199-5p 0 1 0
chr6:41589834|41590067 hsa-miR-4722-3p 1 0 0
chr6:41589834|41590067 hsa-miR-6756-3p 1 0 0
chr6:41589834|41590067 hsa-miR-10401-3p 1 0 0
chr6:41589834|41590067 hsa-miR-6805-3p 1 0 0
chr6:41589834|41590067 hsa-miR-6810-3p 1 0 0
chr6:41589834|41590067 hsa-miR-5581-5p 0 1 0
chr6:41589834|41590067 hsa-miR-6783-3p 1 0 0
chr6:41589834|41590067 hsa-miR-1295b-5p 1 0 0
chr6:41589834|41590067 hsa-miR-6848-3p 1 1 0
chr6:41589834|41590067 hsa-miR-4676-5p 0 1 0
chr6:41589834|41590067 hsa-miR-6827-3p 0 1 0
chr6:41589834|41590067 hsa-miR-370-5p 0 1 0
chr6:41589834|41590067 hsa-miR-6843-3p 0 1 0
chr6:41589834|41590067 hsa-miR-129-1-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:41589834|41590067
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MRPVPEGGGPEAPGSVEGSGRGGEGSSTHWLAEGLG
Nucleotide Sequence CTGAGACCAGTGCCCGAGGGTGGGGGTCCCGAGGCTCCAGGGTCTGTGGAAGGCTCTGGGAGGGGCGGGGAGGGGAGCAGCACTCACTGGCTGGCTGAAGGGCTTGGG
CircID chr6:41589834|41590067
ORF Type ORF2
Protein Length 72
Nucleotide Length 219
Protein Sequence MRPRSGGARDHLGMSLLQRRSPWRMRRSRGPGSAVSNGEGTETSARGWGSRGSRVCGRLWEGRGGEQHSLAG
Nucleotide Sequence CTGCGGCCGAGGTCGGGGGGTGCACGAGACCATCTGGGAATGAGTCTGCTGCAGAGACGGTCACCTTGGAGAATGAGGAGGAGCCGGGGACCGGGTTCAGCTGTGAGCAACGGGGAGGGTACTGAGACCAGTGCCCGAGGGTGGGGGTCCCGAGGCTCCAGGGTCTGTGGAAGGCTCTGGGAGGGGCGGGGAGGGGAGCAGCACTCACTGGCTGGCTGA
CircID chr6:41589834|41590067
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MNPVPGSSSFSKVTVSAADSFPDGLVHPPTSAAAP
Nucleotide Sequence CTGAACCCGGTCCCCGGCTCCTCCTCATTCTCCAAGGTGACCGTCTCTGCAGCAGACTCATTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGCCCCT
CircID chr6:41589834|41590067
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MLPSPPLPEPSTDPGASGPPPSGTGLSTLPVAHS
Nucleotide Sequence CTGCTCCCCTCCCCGCCCCTCCCAGAGCCTTCCACAGACCCTGGAGCCTCGGGACCCCCACCCTCGGGCACTGGTCTCAGTACCCTCCCCGTTGCTCACAGCTGA
CircID chr6:41589834|41590067
ORF Type ORF5
Protein Length 55
Nucleotide Length 165
Protein Sequence MEPRDPHPRALVSVPSPLLTAEPGPRLLLILQGDRLCSRLIPRWSRAPPDLGRSP
Nucleotide Sequence CTGGAGCCTCGGGACCCCCACCCTCGGGCACTGGTCTCAGTACCCTCCCCGTTGCTCACAGCTGAACCCGGTCCCCGGCTCCTCCTCATTCTCCAAGGTGACCGTCTCTGCAGCAGACTCATTCCCAGATGGTCTCGTGCACCCCCCGACCTCGGCCGCAGCCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab