CircRNA Information

General Information
circRNA Basic Information
CircID chr6:41935731|41935882
Strand +
CircType exon
Host Gene ENSG00000112576.11;
Algorism CIRI2;
Sequence CTCCCTGCCTCCAGGAACCACACCACATCTAAGCCTGAAGGGGCGTCTGTTCCCCCTTCACAAAGCCCAAGGGATCTGGTCCTACCCATCCCCGCAGTGTGCACTAAGGGGCCCGGCCAGCCATGTCTGCATTTCGGTGGCTAGTCAAGCTC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:41935731|41935882 hsa-miR-130a-5p 0 0 1
chr6:41935731|41935882 hsa-miR-130a-3p 0 0 1
chr6:41935731|41935882 hsa-miR-301a-5p 0 0 1
chr6:41935731|41935882 hsa-miR-301a-3p 0 0 1
chr6:41935731|41935882 hsa-miR-130b-5p 0 0 1
chr6:41935731|41935882 hsa-miR-130b-3p 0 0 1
chr6:41935731|41935882 hsa-miR-484 0 0 1
chr6:41935731|41935882 hsa-miR-623 0 0 1
chr6:41935731|41935882 hsa-miR-625-5p 0 0 1
chr6:41935731|41935882 hsa-miR-625-3p 0 0 1
chr6:41935731|41935882 hsa-miR-635 0 0 1
chr6:41935731|41935882 hsa-miR-650 0 0 1
chr6:41935731|41935882 hsa-miR-758-5p 0 0 1
chr6:41935731|41935882 hsa-miR-758-3p 0 0 1
chr6:41935731|41935882 hsa-miR-454-5p 0 0 1
chr6:41935731|41935882 hsa-miR-454-3p 0 0 1
chr6:41935731|41935882 hsa-miR-744-5p 0 0 1
chr6:41935731|41935882 hsa-miR-744-3p 0 0 1
chr6:41935731|41935882 hsa-miR-301b-5p 0 0 1
chr6:41935731|41935882 hsa-miR-301b-3p 0 0 1
chr6:41935731|41935882 hsa-miR-940 0 0 1
chr6:41935731|41935882 hsa-miR-1827 0 0 1
chr6:41935731|41935882 hsa-miR-296-5p 0 0 1
chr6:41935731|41935882 hsa-miR-542-5p 0 0 1
chr6:41935731|41935882 hsa-miR-188-5p 0 1 1
chr6:41935731|41935882 hsa-miR-576-3p 0 0 1
chr6:41935731|41935882 hsa-miR-1207-5p 0 1 1
chr6:41935731|41935882 hsa-miR-608 1 1 0
chr6:41935731|41935882 hsa-miR-663a 1 0 0
chr6:41935731|41935882 hsa-miR-933 1 0 0
chr6:41935731|41935882 hsa-miR-1183 1 0 0
chr6:41935731|41935882 hsa-miR-3166 0 1 0
chr6:41935731|41935882 hsa-miR-3911 1 1 0
chr6:41935731|41935882 hsa-miR-4498 1 0 0
chr6:41935731|41935882 hsa-miR-4539 1 0 0
chr6:41935731|41935882 hsa-miR-4651 1 1 0
chr6:41935731|41935882 hsa-miR-4657 1 0 0
chr6:41935731|41935882 hsa-miR-4706 0 1 0
chr6:41935731|41935882 hsa-miR-4734 1 1 0
chr6:41935731|41935882 hsa-miR-5787 1 0 0
chr6:41935731|41935882 hsa-miR-8064 0 1 0
chr6:41935731|41935882 hsa-miR-8072 1 0 0
chr6:41935731|41935882 hsa-miR-6747-5p 1 0 0
chr6:41935731|41935882 hsa-miR-6857-5p 1 1 0
chr6:41935731|41935882 hsa-miR-6728-5p 1 1 0
chr6:41935731|41935882 hsa-miR-3934-5p 1 0 0
chr6:41935731|41935882 hsa-miR-6757-5p 1 1 0
chr6:41935731|41935882 hsa-miR-6842-3p 1 1 0
chr6:41935731|41935882 hsa-miR-197-5p 1 0 0
chr6:41935731|41935882 hsa-miR-3189-5p 1 0 0
chr6:41935731|41935882 hsa-miR-6748-5p 1 0 0
chr6:41935731|41935882 hsa-miR-23a-5p 0 1 0
chr6:41935731|41935882 hsa-miR-1229-5p 1 1 0
chr6:41935731|41935882 hsa-miR-889-5p 0 1 0
chr6:41935731|41935882 hsa-miR-6786-3p 0 1 0
chr6:41935731|41935882 hsa-miR-6864-5p 0 1 0
chr6:41935731|41935882 hsa-miR-3189-3p 0 1 0
chr6:41935731|41935882 hsa-miR-1225-5p 1 0 0
chr6:41935731|41935882 hsa-miR-4671-3p 0 1 0
chr6:41935731|41935882 hsa-miR-1287-3p 0 1 0
chr6:41935731|41935882 hsa-miR-1343-5p 1 0 0
chr6:41935731|41935882 hsa-miR-6737-5p 1 0 0
chr6:41935731|41935882 hsa-miR-6752-5p 1 0 0
chr6:41935731|41935882 hsa-miR-6756-5p 1 0 0
chr6:41935731|41935882 hsa-miR-10401-5p 1 0 0
chr6:41935731|41935882 hsa-miR-6722-3p 1 0 0
chr6:41935731|41935882 hsa-miR-6779-5p 1 0 0
chr6:41935731|41935882 hsa-miR-6808-5p 0 1 0
chr6:41935731|41935882 hsa-miR-6836-5p 1 0 0
chr6:41935731|41935882 hsa-miR-4749-5p 1 1 0
chr6:41935731|41935882 hsa-miR-6887-5p 0 1 0
chr6:41935731|41935882 hsa-miR-939-5p 1 0 0
chr6:41935731|41935882 hsa-miR-6766-5p 1 1 0
chr6:41935731|41935882 hsa-miR-6724-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:41935731|41935882
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MPPGTTPHLSLKGRLFPLHKAQGIWSYPSPQCALRGPASHVCISVASQA
Nucleotide Sequence CTGCCTCCAGGAACCACACCACATCTAAGCCTGAAGGGGCGTCTGTTCCCCCTTCACAAAGCCCAAGGGATCTGGTCCTACCCATCCCCGCAGTGTGCACTAAGGGGCCCGGCCAGCCATGTCTGCATTTCGGTGGCTAGTCAAGCT
CircID chr6:41935731|41935882
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MGRTRSLGLCEGGTDAPSGLDVVWFLEAG
Nucleotide Sequence ATGGGTAGGACCAGATCCCTTGGGCTTTGTGAAGGGGGAACAGACGCCCCTTCAGGCTTAGATGTGGTGTGGTTCCTGGAGGCAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab