CircRNA Information

General Information
circRNA Basic Information
CircID chr6:42241825|42242118
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence AGGGGTGAGCCTGTAATCCCAGCACTTTGGGAAGCCAAGGCAGGAGGACTGCTTAAGCTCAGGAGTCTGAGAACAGCCTGGGCAACAAAGTGAGACGTTGTCTCTACAAAAAATTAAAATATGAGTGGGGCGTTGTGGTGTGTGCCTGTAGTCCCAGCTACTCAGGTGGCTGAGGTGGGAGGATTGCTTGAGCCCAAGAAGTTGAGGCTGTAGTGAGCTATGATCATGCCGCTGCATTCTAGCCTGAGCGACAAAGTGAGACCCTGTCTCAAACAAACAAAAGAAAATTTGCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:42241825|42242118 hsa-miR-17-5p 0 0 1
chr6:42241825|42242118 hsa-miR-17-3p 0 0 1
chr6:42241825|42242118 hsa-miR-20a-5p 0 0 1
chr6:42241825|42242118 hsa-miR-20a-3p 0 0 1
chr6:42241825|42242118 hsa-miR-93-5p 0 0 1
chr6:42241825|42242118 hsa-miR-93-3p 0 0 1
chr6:42241825|42242118 hsa-miR-106a-5p 0 0 1
chr6:42241825|42242118 hsa-miR-106a-3p 0 0 1
chr6:42241825|42242118 hsa-miR-106b-5p 0 0 1
chr6:42241825|42242118 hsa-miR-106b-3p 0 0 1
chr6:42241825|42242118 hsa-miR-302a-5p 0 0 1
chr6:42241825|42242118 hsa-miR-302a-3p 0 0 1
chr6:42241825|42242118 hsa-miR-302b-5p 0 0 1
chr6:42241825|42242118 hsa-miR-302b-3p 0 0 1
chr6:42241825|42242118 hsa-miR-302c-5p 0 0 1
chr6:42241825|42242118 hsa-miR-302c-3p 0 0 1
chr6:42241825|42242118 hsa-miR-302d-5p 0 0 1
chr6:42241825|42242118 hsa-miR-302d-3p 0 0 1
chr6:42241825|42242118 hsa-miR-372-5p 0 0 1
chr6:42241825|42242118 hsa-miR-372-3p 0 0 1
chr6:42241825|42242118 hsa-miR-373-5p 0 0 1
chr6:42241825|42242118 hsa-miR-373-3p 0 0 1
chr6:42241825|42242118 hsa-miR-20b-5p 0 0 1
chr6:42241825|42242118 hsa-miR-20b-3p 0 0 1
chr6:42241825|42242118 hsa-miR-484 0 1 1
chr6:42241825|42242118 hsa-miR-520e-5p 0 0 1
chr6:42241825|42242118 hsa-miR-520e-3p 0 0 1
chr6:42241825|42242118 hsa-miR-520b-5p 0 0 1
chr6:42241825|42242118 hsa-miR-520b-3p 0 0 1
chr6:42241825|42242118 hsa-miR-519d-5p 0 0 1
chr6:42241825|42242118 hsa-miR-519d-3p 0 0 1
chr6:42241825|42242118 hsa-miR-520g-5p 0 0 1
chr6:42241825|42242118 hsa-miR-520g-3p 0 0 1
chr6:42241825|42242118 hsa-miR-520h 0 0 1
chr6:42241825|42242118 hsa-miR-635 0 0 1
chr6:42241825|42242118 hsa-miR-1182 0 0 1
chr6:42241825|42242118 hsa-miR-1200 0 0 1
chr6:42241825|42242118 hsa-miR-302e 0 0 1
chr6:42241825|42242118 hsa-miR-1279 0 0 1
chr6:42241825|42242118 hsa-miR-129-5p 0 0 1
chr6:42241825|42242118 hsa-miR-512-3p 0 0 1
chr6:42241825|42242118 hsa-miR-532-3p 0 0 1
chr6:42241825|42242118 hsa-miR-1224-3p 0 1 1
chr6:42241825|42242118 hsa-miR-520d-3p 0 0 1
chr6:42241825|42242118 hsa-miR-520a-3p 0 0 1
chr6:42241825|42242118 hsa-miR-520c-3p 0 0 1
chr6:42241825|42242118 hsa-miR-362-3p 0 0 1
chr6:42241825|42242118 hsa-miR-590-3p 0 0 1
chr6:42241825|42242118 hsa-miR-1260 0 0 1
chr6:42241825|42242118 hsa-miR-1280 0 0 1
chr6:42241825|42242118 hsa-miR-329 0 0 1
chr6:42241825|42242118 hsa-miR-1303 1 1 0
chr6:42241825|42242118 hsa-miR-1260a 1 1 0
chr6:42241825|42242118 hsa-miR-1538 1 0 0
chr6:42241825|42242118 hsa-miR-1976 0 1 0
chr6:42241825|42242118 hsa-miR-3135a 1 0 0
chr6:42241825|42242118 hsa-miR-1260b 0 1 0
chr6:42241825|42242118 hsa-miR-4269 0 1 0
chr6:42241825|42242118 hsa-miR-4274 0 1 0
chr6:42241825|42242118 hsa-miR-4425 0 1 0
chr6:42241825|42242118 hsa-miR-4430 1 1 0
chr6:42241825|42242118 hsa-miR-4467 1 0 0
chr6:42241825|42242118 hsa-miR-6078 0 1 0
chr6:42241825|42242118 hsa-miR-7974 1 0 0
chr6:42241825|42242118 hsa-miR-26b-3p 0 1 0
chr6:42241825|42242118 hsa-miR-6749-3p 0 1 0
chr6:42241825|42242118 hsa-miR-212-5p 0 1 0
chr6:42241825|42242118 hsa-miR-6861-5p 1 1 0
chr6:42241825|42242118 hsa-miR-6875-3p 1 0 0
chr6:42241825|42242118 hsa-miR-3934-3p 0 1 0
chr6:42241825|42242118 hsa-miR-4691-3p 0 1 0
chr6:42241825|42242118 hsa-miR-5585-3p 1 1 0
chr6:42241825|42242118 hsa-miR-1304-3p 0 1 0
chr6:42241825|42242118 hsa-miR-1184 0 1 0
chr6:42241825|42242118 hsa-miR-6869-5p 0 1 0
chr6:42241825|42242118 hsa-miR-1910-5p 0 1 0
chr6:42241825|42242118 hsa-miR-4746-3p 1 0 0
chr6:42241825|42242118 hsa-miR-4524a-3p 0 1 0
chr6:42241825|42242118 hsa-miR-1285-5p 1 1 0
chr6:42241825|42242118 hsa-miR-3670 0 1 0
chr6:42241825|42242118 hsa-miR-1228-3p 1 0 0
chr6:42241825|42242118 hsa-miR-4524b-3p 0 1 0
chr6:42241825|42242118 hsa-miR-10400-5p 1 0 0
chr6:42241825|42242118 hsa-miR-4763-3p 1 0 0
chr6:42241825|42242118 hsa-miR-6813-5p 1 0 0
chr6:42241825|42242118 hsa-miR-6774-5p 0 1 0
chr6:42241825|42242118 hsa-miR-1909-3p 1 0 0
chr6:42241825|42242118 hsa-miR-7151-3p 1 0 0
chr6:42241825|42242118 hsa-miR-619-5p 1 1 0
chr6:42241825|42242118 hsa-miR-7156-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:42241825|42242118
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MSGALWCVPVVPATQVAEVGGLLEPKKLRL
Nucleotide Sequence ATGAGTGGGGCGTTGTGGTGTGTGCCTGTAGTCCCAGCTACTCAGGTGGCTGAGGTGGGAGGATTGCTTGAGCCCAAGAAGTTGAGGCTGTAG
CircID chr6:42241825|42242118
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MIMPLHSSLSDKVRPCLKQTKENLH
Nucleotide Sequence ATGATCATGCCGCTGCATTCTAGCCTGAGCGACAAAGTGAGACCCTGTCTCAAACAAACAAAAGAAAATTTGCAT
CircID chr6:42241825|42242118
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MGNKVRRCLYKKLKYEWGVVVCACSPSYSGG
Nucleotide Sequence CTGGGCAACAAAGTGAGACGTTGTCTCTACAAAAAATTAAAATATGAGTGGGGCGTTGTGGTGTGTGCCTGTAGTCCCAGCTACTCAGGTGGCTGA
CircID chr6:42241825|42242118
ORF Type ORF4
Protein Length 98
Nucleotide Length 294
Protein Sequence MQIFFCLFETGSHFVAQARMQRHDHSSLQPQLLGLKQSSHLSHLSSWDYRHTPQRPTHILIFCRDNVSLCCPGCSQTPELKQSSCLGFPKCWDYRLTP
Nucleotide Sequence ATGCAAATTTTCTTTTGTTTGTTTGAGACAGGGTCTCACTTTGTCGCTCAGGCTAGAATGCAGCGGCATGATCATAGCTCACTACAGCCTCAACTTCTTGGGCTCAAGCAATCCTCCCACCTCAGCCACCTGAGTAGCTGGGACTACAGGCACACACCACAACGCCCCACTCATATTTTAATTTTTTGTAGAGACAACGTCTCACTTTGTTGCCCAGGCTGTTCTCAGACTCCTGAGCTTAAGCAGTCCTCCTGCCTTGGCTTCCCAAAGTGCTGGGATTACAGGCTCACCCCT
CircID chr6:42241825|42242118
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MRQGLTLSLRLECSGMIIAHYSLNFLGSSNPPTSAT
Nucleotide Sequence TTGAGACAGGGTCTCACTTTGTCGCTCAGGCTAGAATGCAGCGGCATGATCATAGCTCACTACAGCCTCAACTTCTTGGGCTCAAGCAATCCTCCCACCTCAGCCACCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab