CircRNA Information

General Information
circRNA Basic Information
CircID chr6:42252646|42252792
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence ACCTGGGAAGCAAATGAGGGGGTTCAGCAGTGGGAGAAGGAGGTGGTGGCTGGGACATGTGATGGGGAAGATTCTGCTGCCTCCCCTGCGGCTTAGAAGGAAACTGTTAAGGAGATGGTTTTGGGTCAGACTTCAGAGACCAGTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:42252646|42252792 hsa-miR-212-5p 0 0 1
chr6:42252646|42252792 hsa-miR-212-3p 0 0 1
chr6:42252646|42252792 hsa-miR-132-5p 0 0 1
chr6:42252646|42252792 hsa-miR-132-3p 0 0 1
chr6:42252646|42252792 hsa-miR-150-5p 0 0 1
chr6:42252646|42252792 hsa-miR-150-3p 0 0 1
chr6:42252646|42252792 hsa-miR-579-5p 0 0 1
chr6:42252646|42252792 hsa-miR-579-3p 0 0 1
chr6:42252646|42252792 hsa-miR-593-5p 0 0 1
chr6:42252646|42252792 hsa-miR-593-3p 0 0 1
chr6:42252646|42252792 hsa-miR-650 0 1 1
chr6:42252646|42252792 hsa-miR-922 0 0 1
chr6:42252646|42252792 hsa-miR-1237-5p 0 0 1
chr6:42252646|42252792 hsa-miR-1237-3p 0 0 1
chr6:42252646|42252792 hsa-miR-1248 0 0 1
chr6:42252646|42252792 hsa-miR-1827 0 1 1
chr6:42252646|42252792 hsa-miR-532-3p 0 0 1
chr6:42252646|42252792 hsa-miR-516a-3p 0 0 1
chr6:42252646|42252792 hsa-miR-220b 0 0 1
chr6:42252646|42252792 hsa-miR-346 1 0 0
chr6:42252646|42252792 hsa-miR-1281 1 0 0
chr6:42252646|42252792 hsa-miR-1260b 1 0 0
chr6:42252646|42252792 hsa-miR-4313 1 0 0
chr6:42252646|42252792 hsa-miR-4258 1 0 0
chr6:42252646|42252792 hsa-miR-23c 1 0 0
chr6:42252646|42252792 hsa-miR-3943 1 0 0
chr6:42252646|42252792 hsa-miR-4469 1 0 0
chr6:42252646|42252792 hsa-miR-3972 1 0 0
chr6:42252646|42252792 hsa-miR-4663 1 0 0
chr6:42252646|42252792 hsa-miR-5193 1 0 0
chr6:42252646|42252792 hsa-miR-5690 1 1 0
chr6:42252646|42252792 hsa-miR-6072 1 0 0
chr6:42252646|42252792 hsa-miR-7977 1 1 0
chr6:42252646|42252792 hsa-miR-197-3p 1 1 0
chr6:42252646|42252792 hsa-miR-6749-3p 1 0 0
chr6:42252646|42252792 hsa-miR-93-3p 0 1 0
chr6:42252646|42252792 hsa-miR-6825-5p 0 1 0
chr6:42252646|42252792 hsa-miR-766-3p 1 0 0
chr6:42252646|42252792 hsa-miR-1225-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6842-3p 1 0 0
chr6:42252646|42252792 hsa-miR-3189-5p 1 0 0
chr6:42252646|42252792 hsa-miR-6849-3p 1 0 0
chr6:42252646|42252792 hsa-miR-4728-3p 0 1 0
chr6:42252646|42252792 hsa-miR-3194-5p 1 0 0
chr6:42252646|42252792 hsa-miR-6774-3p 1 0 0
chr6:42252646|42252792 hsa-miR-4713-5p 1 1 0
chr6:42252646|42252792 hsa-miR-7109-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6884-3p 1 1 0
chr6:42252646|42252792 hsa-miR-5187-3p 1 0 0
chr6:42252646|42252792 hsa-miR-3679-3p 1 0 0
chr6:42252646|42252792 hsa-miR-4717-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6776-3p 1 0 0
chr6:42252646|42252792 hsa-miR-4640-3p 1 1 0
chr6:42252646|42252792 hsa-miR-6886-5p 0 1 0
chr6:42252646|42252792 hsa-miR-6769a-3p 1 0 0
chr6:42252646|42252792 hsa-miR-4776-3p 1 0 0
chr6:42252646|42252792 hsa-miR-1236-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6889-3p 1 0 0
chr6:42252646|42252792 hsa-miR-3180-5p 1 0 0
chr6:42252646|42252792 hsa-miR-4778-3p 0 1 0
chr6:42252646|42252792 hsa-miR-629-3p 0 1 0
chr6:42252646|42252792 hsa-miR-7112-3p 1 0 0
chr6:42252646|42252792 hsa-miR-1224-3p 1 1 0
chr6:42252646|42252792 hsa-miR-6746-3p 1 1 0
chr6:42252646|42252792 hsa-miR-6826-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6795-3p 0 1 0
chr6:42252646|42252792 hsa-miR-6883-3p 1 0 0
chr6:42252646|42252792 hsa-miR-454-5p 1 0 0
chr6:42252646|42252792 hsa-miR-6748-3p 1 0 0
chr6:42252646|42252792 hsa-miR-1255b-2-3p 0 1 0
chr6:42252646|42252792 hsa-miR-4433a-5p 1 0 0
chr6:42252646|42252792 hsa-miR-4750-3p 1 1 0
chr6:42252646|42252792 hsa-miR-4433b-5p 1 1 0
chr6:42252646|42252792 hsa-miR-2116-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6732-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6502-3p 0 1 0
chr6:42252646|42252792 hsa-miR-3156-3p 0 1 0
chr6:42252646|42252792 hsa-miR-885-5p 1 0 0
chr6:42252646|42252792 hsa-miR-3127-3p 1 0 0
chr6:42252646|42252792 hsa-miR-4755-5p 1 0 0
chr6:42252646|42252792 hsa-miR-328-5p 0 1 0
chr6:42252646|42252792 hsa-miR-6727-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6756-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6862-3p 1 0 0
chr6:42252646|42252792 hsa-miR-11181-5p 0 1 0
chr6:42252646|42252792 hsa-miR-3130-5p 1 0 0
chr6:42252646|42252792 hsa-miR-6511b-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6891-3p 1 0 0
chr6:42252646|42252792 hsa-miR-5006-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6797-3p 1 0 0
chr6:42252646|42252792 hsa-miR-23b-3p 1 0 0
chr6:42252646|42252792 hsa-miR-4769-3p 1 0 0
chr6:42252646|42252792 hsa-miR-6843-3p 0 1 0
chr6:42252646|42252792 hsa-miR-664b-3p 0 1 0
chr6:42252646|42252792 hsa-miR-6834-3p 1 1 0
chr6:42252646|42252792 hsa-miR-6764-3p 1 0 0
chr6:42252646|42252792 hsa-miR-1537-3p 0 1 0
chr6:42252646|42252792 hsa-miR-3927-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr6:42252646|42252792
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence MRGFSSGRRRWWLGHVMGKILLPPLRLRRKLLRRWFWVRLQRPV
Nucleotide Sequence ATGAGGGGGTTCAGCAGTGGGAGAAGGAGGTGGTGGCTGGGACATGTGATGGGGAAGATTCTGCTGCCTCCCCTGCGGCTTAGAAGGAAACTGTTAAGGAGATGGTTTTGGGTCAGACTTCAGAGACCAGTG
CircID chr6:42252646|42252792
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MTQNHLLNSFLLSRRGGSRIFPITCPSHHLLLPLLNPLICFPG
Nucleotide Sequence CTGACCCAAAACCATCTCCTTAACAGTTTCCTTCTAAGCCGCAGGGGAGGCAGCAGAATCTTCCCCATCACATGTCCCAGCCACCACCTCCTTCTCCCACTGCTGAACCCCCTCATTTGCTTCCCAGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab