CircRNA Information

General Information
circRNA Basic Information
CircID chr6:42603588|42612291
Strand +
CircType exon
Host Gene ENSG00000024048.10;
Algorism find_circ;CIRI2;DCC;
Sequence GATCCTCTTGTTCATTTATCAGAAGATGTGATAGCAAGAACTTATAACATTTTTGCTATTACGTTTCGGTATGCAGTAGAAATATTAACCTGGGAAAAAGAAAGTGAATTGCCAGCAGATTTAGAGATGGTAGAGAAGAGTGACACCTACTATTGCATGCTGTTTAATGATGAGGTTCACACCTATGAACAAGTTATTTATACTCTTCAGAAAGCTGTTAACTGTACACAAAAAGAAGCTATTGGTTTTGCAACTACAGTAGATCGAGATGGGCGTAGGTCTGTTCGATATGGAGATTTTCAGTATTGTGAGCAAGCAAAATCAGTAATTGTGAGAAATACCAGTAGACAGACAAAGCCACTCAAAGTTCAAGTTATGCATTCGTCTATTGTCGCACATCAGAATTTTGGTTTGAAACTTTTGTCTTGGCTGGGAAGTATTATTGGATATTCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:42603588|42612291 hsa-miR-217-5p 0 1 1
chr6:42603588|42612291 hsa-miR-217-3p 0 1 1
chr6:42603588|42612291 hsa-miR-579-5p 0 0 1
chr6:42603588|42612291 hsa-miR-579-3p 0 0 1
chr6:42603588|42612291 hsa-miR-649 0 0 1
chr6:42603588|42612291 hsa-miR-543 0 0 1
chr6:42603588|42612291 hsa-miR-922 0 0 1
chr6:42603588|42612291 hsa-miR-936 0 0 1
chr6:42603588|42612291 hsa-miR-1202 0 1 1
chr6:42603588|42612291 hsa-miR-1206 0 0 1
chr6:42603588|42612291 hsa-miR-1303 0 0 1
chr6:42603588|42612291 hsa-miR-129-5p 0 0 1
chr6:42603588|42612291 hsa-miR-361-5p 0 0 1
chr6:42603588|42612291 hsa-miR-490-3p 0 0 1
chr6:42603588|42612291 hsa-miR-576-3p 0 0 1
chr6:42603588|42612291 hsa-miR-219-2-3p 0 0 1
chr6:42603588|42612291 hsa-miR-3154 1 0 0
chr6:42603588|42612291 hsa-miR-4450 1 0 0
chr6:42603588|42612291 hsa-miR-5705 1 0 0
chr6:42603588|42612291 hsa-miR-6124 0 1 0
chr6:42603588|42612291 hsa-miR-7851-3p 1 1 0
chr6:42603588|42612291 hsa-miR-6746-5p 1 0 0
chr6:42603588|42612291 hsa-miR-3605-5p 1 1 0
chr6:42603588|42612291 hsa-miR-5006-5p 1 0 0
chr6:42603588|42612291 hsa-miR-204-3p 0 1 0
chr6:42603588|42612291 hsa-miR-4668-5p 0 1 0
chr6:42603588|42612291 hsa-miR-4774-5p 1 0 0
chr6:42603588|42612291 hsa-miR-6788-5p 0 1 0
chr6:42603588|42612291 hsa-miR-449c-5p 1 0 0
chr6:42603588|42612291 hsa-miR-6511b-5p 1 0 0
chr6:42603588|42612291 hsa-miR-6739-5p 0 1 0
chr6:42603588|42612291 hsa-miR-4646-5p 0 1 0
chr6:42603588|42612291 hsa-miR-4667-5p 0 1 0
chr6:42603588|42612291 hsa-miR-9983-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:42603588|42612291
ORF Type ORF1
Protein Length 109
Nucleotide Length 327
Protein Sequence MVEKSDTYYCMLFNDEVHTYEQVIYTLQKAVNCTQKEAIGFATTVDRDGRRSVRYGDFQYCEQAKSVIVRNTSRQTKPLKVQVMHSSIVAHQNFGLKLLSWLGSIIGYS
Nucleotide Sequence ATGGTAGAGAAGAGTGACACCTACTATTGCATGCTGTTTAATGATGAGGTTCACACCTATGAACAAGTTATTTATACTCTTCAGAAAGCTGTTAACTGTACACAAAAAGAAGCTATTGGTTTTGCAACTACAGTAGATCGAGATGGGCGTAGGTCTGTTCGATATGGAGATTTTCAGTATTGTGAGCAAGCAAAATCAGTAATTGTGAGAAATACCAGTAGACAGACAAAGCCACTCAAAGTTCAAGTTATGCATTCGTCTATTGTCGCACATCAGAATTTTGGTTTGAAACTTTTGTCTTGGCTGGGAAGTATTATTGGATATTCA
CircID chr6:42603588|42612291
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MMRFTPMNKLFILFRKLLTVHKKKLLVLQLQ*
Nucleotide Sequence ATGATGAGGTTCACACCTATGAACAAGTTATTTATACTCTTCAGAAAGCTGTTAACTGTACACAAAAAGAAGCTATTGGTTTTGCAACTACAGTAG
CircID chr6:42603588|42612291
ORF Type ORF3
Protein Length 65
Nucleotide Length 195
Protein Sequence LLTILKISISNRPTPISIYCSCKTNSFFLCTVNSFLKSINNLFIGVNLIIKQHAIVGVTLLYHL*
Nucleotide Sequence TTGCTCACAATACTGAAAATCTCCATATCGAACAGACCTACGCCCATCTCGATCTACTGTAGTTGCAAAACCAATAGCTTCTTTTTGTGTACAGTTAACAGCTTTCTGAAGAGTATAAATAACTTGTTCATAGGTGTGAACCTCATCATTAAACAGCATGCAATAGTAGGTGTCACTCTTCTCTACCATCTCTAA
CircID chr6:42603588|42612291
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence LNTISKSAGNSLSFSQVNISTAYRNVIAKML
Nucleotide Sequence CTGAATACCATCTCTAAATCTGCTGGCAATTCACTTTCTTTTTCCCAGGTTAATATTTCTACTGCATACCGAAACGTAATAGCAAAAATGTTATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr6:42603588|42612291 U2AF2 12 6 2
chr6:42603588|42612291 ELAVL1 3 2 0
chr6:42603588|42612291 CELF2 2 0 0
chr6:42603588|42612291 PRPF8 0 2 0
chr6:42603588|42612291 TAF15 0 2 0
chr6:42603588|42612291 FMR1 0 2 1
chr6:42603588|42612291 FUS 1 1 0
chr6:42603588|42612291 SRSF7 1 0 0
chr6:42603588|42612291 NOP58 2 3 1
chr6:42603588|42612291 NOP56 1 1 0
chr6:42603588|42612291 DDX54 0 0 2
chr6:42603588|42612291 RBM10 1 0 0
chr6:42603588|42612291 FIP1L1 0 1 0
chr6:42603588|42612291 HNRNPC 8 14 0
chr6:42603588|42612291 TRA2A 1 0 0
chr6:42603588|42612291 DHX9 0 2 0
chr6:42603588|42612291 MSI2 0 0 1
chr6:42603588|42612291 MSI1 0 1 0
chr6:42603588|42612291 HNRNPA1 0 3 0
chr6:42603588|42612291 LIN28B 0 0 6
chr6:42603588|42612291 FXR2 0 1 0
chr6:42603588|42612291 IGF2BP2 1 2 1
chr6:42603588|42612291 TARDBP 9 1 0
chr6:42603588|42612291 RBFOX2 2 0 0
chr6:42603588|42612291 RBM47 0 0 2
chr6:42603588|42612291 CSTF2T 0 0 1
chr6:42603588|42612291 TIA1 0 2 0
chr6:42603588|42612291 AGO2 0 0 1
chr6:42603588|42612291 EIF4A3 4 1 9
chr6:42603588|42612291 FBL 0 0 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab