CircRNA Information

General Information
circRNA Basic Information
CircID chr6:42789830|42790100
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence GTGCACAGATCAGAATGTCAAATGCTATAAGCCGCCACACATTCAATGGTCTTGATTCTTTTTCTCACAGATCCCTCTACTAGTGTAAGATATTGCTGATCTCTAACAGAATACTGTTTTCCTTTTGATTCCCATCATTCTACTCTACCTAGGTTCTCCAAGTACTGAGTCAGCAAATGTTTACTGAGTGCTCAACTTGTTTTGAATGCTGTGCTAAAGGCTTAGAACAAAACAGTAAACATGGGAGCAAATAATGTAATATTCCCAGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:42789830|42790100 hsa-miR-30a-5p 0 0 1
chr6:42789830|42790100 hsa-miR-30a-3p 0 0 1
chr6:42789830|42790100 hsa-miR-30d-5p 0 0 1
chr6:42789830|42790100 hsa-miR-30d-3p 0 0 1
chr6:42789830|42790100 hsa-miR-30b-5p 0 0 1
chr6:42789830|42790100 hsa-miR-30b-3p 0 0 1
chr6:42789830|42790100 hsa-miR-144-5p 0 0 1
chr6:42789830|42790100 hsa-miR-144-3p 0 0 1
chr6:42789830|42790100 hsa-miR-186-5p 0 0 1
chr6:42789830|42790100 hsa-miR-186-3p 0 0 1
chr6:42789830|42790100 hsa-miR-30e-5p 0 0 1
chr6:42789830|42790100 hsa-miR-30e-3p 0 0 1
chr6:42789830|42790100 hsa-miR-375-5p 0 0 1
chr6:42789830|42790100 hsa-miR-375-3p 0 0 1
chr6:42789830|42790100 hsa-miR-325 0 0 1
chr6:42789830|42790100 hsa-miR-345-5p 0 0 1
chr6:42789830|42790100 hsa-miR-345-3p 0 0 1
chr6:42789830|42790100 hsa-miR-196b-5p 0 0 1
chr6:42789830|42790100 hsa-miR-196b-3p 0 0 1
chr6:42789830|42790100 hsa-miR-452-5p 0 0 1
chr6:42789830|42790100 hsa-miR-452-3p 0 0 1
chr6:42789830|42790100 hsa-miR-489-5p 0 0 1
chr6:42789830|42790100 hsa-miR-489-3p 0 0 1
chr6:42789830|42790100 hsa-miR-432-5p 0 0 1
chr6:42789830|42790100 hsa-miR-432-3p 0 0 1
chr6:42789830|42790100 hsa-miR-539-5p 0 0 1
chr6:42789830|42790100 hsa-miR-539-3p 0 0 1
chr6:42789830|42790100 hsa-miR-545-5p 0 0 1
chr6:42789830|42790100 hsa-miR-545-3p 0 0 1
chr6:42789830|42790100 hsa-miR-570-5p 0 0 1
chr6:42789830|42790100 hsa-miR-570-3p 0 0 1
chr6:42789830|42790100 hsa-miR-589-5p 0 0 1
chr6:42789830|42790100 hsa-miR-589-3p 0 0 1
chr6:42789830|42790100 hsa-miR-600 0 0 1
chr6:42789830|42790100 hsa-miR-620 0 0 1
chr6:42789830|42790100 hsa-miR-630 0 1 1
chr6:42789830|42790100 hsa-miR-631 0 0 1
chr6:42789830|42790100 hsa-miR-411-5p 0 0 1
chr6:42789830|42790100 hsa-miR-411-3p 0 0 1
chr6:42789830|42790100 hsa-miR-1323 0 0 1
chr6:42789830|42790100 hsa-miR-890 0 0 1
chr6:42789830|42790100 hsa-miR-1179 0 0 1
chr6:42789830|42790100 hsa-miR-1303 0 1 1
chr6:42789830|42790100 hsa-miR-548o-3p 0 0 1
chr6:42789830|42790100 hsa-miR-1270 0 0 1
chr6:42789830|42790100 hsa-miR-548o 0 0 1
chr6:42789830|42790100 hsa-miR-628-5p 0 0 1
chr6:42789830|42790100 hsa-miR-30c 0 0 1
chr6:42789830|42790100 hsa-miR-644 0 0 1
chr6:42789830|42790100 hsa-miR-323-3p 0 0 1
chr6:42789830|42790100 hsa-miR-514 0 0 1
chr6:42789830|42790100 hsa-miR-196a 0 0 1
chr6:42789830|42790100 hsa-miR-147 0 0 1
chr6:42789830|42790100 hsa-miR-638 1 0 0
chr6:42789830|42790100 hsa-miR-658 1 0 0
chr6:42789830|42790100 hsa-miR-936 1 1 0
chr6:42789830|42790100 hsa-miR-3132 1 0 0
chr6:42789830|42790100 hsa-miR-3612 1 0 0
chr6:42789830|42790100 hsa-miR-3661 0 1 0
chr6:42789830|42790100 hsa-miR-4538 1 0 0
chr6:42789830|42790100 hsa-miR-6127 1 0 0
chr6:42789830|42790100 hsa-miR-12114 1 0 0
chr6:42789830|42790100 hsa-miR-135a-3p 1 0 0
chr6:42789830|42790100 hsa-miR-7-5p 0 1 0
chr6:42789830|42790100 hsa-miR-6861-5p 1 0 0
chr6:42789830|42790100 hsa-miR-8071 1 0 0
chr6:42789830|42790100 hsa-miR-7851-3p 0 1 0
chr6:42789830|42790100 hsa-miR-7847-3p 1 0 0
chr6:42789830|42790100 hsa-miR-197-5p 1 1 0
chr6:42789830|42790100 hsa-miR-939-3p 1 0 0
chr6:42789830|42790100 hsa-miR-4693-3p 1 0 0
chr6:42789830|42790100 hsa-miR-1229-5p 1 0 0
chr6:42789830|42790100 hsa-miR-619-3p 1 0 0
chr6:42789830|42790100 hsa-miR-574-5p 1 0 0
chr6:42789830|42790100 hsa-miR-4714-3p 1 0 0
chr6:42789830|42790100 hsa-miR-4797-3p 0 1 0
chr6:42789830|42790100 hsa-miR-4677-3p 0 1 0
chr6:42789830|42790100 hsa-miR-1249-5p 1 0 0
chr6:42789830|42790100 hsa-miR-6797-5p 1 0 0
chr6:42789830|42790100 hsa-miR-6794-5p 1 0 0
chr6:42789830|42790100 hsa-miR-6831-5p 1 1 0
chr6:42789830|42790100 hsa-miR-6731-5p 1 0 0
chr6:42789830|42790100 hsa-miR-4700-5p 1 0 0
chr6:42789830|42790100 hsa-miR-4646-5p 1 0 0
chr6:42789830|42790100 hsa-miR-4667-5p 1 0 0
chr6:42789830|42790100 hsa-miR-6790-5p 1 0 0
chr6:42789830|42790100 hsa-miR-7157-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:42789830|42790100
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MSQQMFTECSTCFECCAKGLEQNSKHGSK
Nucleotide Sequence CTGAGTCAGCAAATGTTTACTGAGTGCTCAACTTGTTTTGAATGCTGTGCTAAAGGCTTAGAACAAAACAGTAAACATGGGAGCAAATAA
CircID chr6:42789830|42790100
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MGILHYLLPCLLFCSKPLAQHSKQVEHSVNIC
Nucleotide Sequence CTGGGAATATTACATTATTTGCTCCCATGTTTACTGTTTTGTTCTAAGCCTTTAGCACAGCATTCAAAACAAGTTGAGCACTCAGTAAACATTTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab