CircRNA Information

General Information
circRNA Basic Information
CircID chr6:42934475|42935670
Strand +
CircType exon
Host Gene ENSG00000137161.16;
Algorism find_circ;CIRI2;DCC;
Sequence TGTGTAAATATGTTGCTGTGGAGCTGAAGTCAGCCTTTGAGGAAACCGGCAAGACCAAGGAGGTGATTGGCACGGGCTATGGCATCCTGGACCAGAAGGCCTCTGGAGTCAAATACACCAAGTCCATTTCAGATCCCCCAGACCAGATGACCTATCTTCCTTCCAGCTCTGAGTCACTTCCCATTGGTGAGATGTGCAGGTGTTGGGGCACAGGGCTGGAGGGACAGACCACTAACCCACTGCGGCTAGGAGGGGAACTCAGTTCCTCATCCTCCTGTCTTGGCAGGGACTTGCGGTTAATCGAAGTCACTGAGACCATTTGCAAGAGGCTCCTGGATTATAGCCTGCACAAGGAGAGGACCGGCAGCAATCGATTTGCCAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:42934475|42935670 hsa-miR-31-5p 0 0 1
chr6:42934475|42935670 hsa-miR-31-3p 0 0 1
chr6:42934475|42935670 hsa-miR-96-5p 0 0 1
chr6:42934475|42935670 hsa-miR-96-3p 0 0 1
chr6:42934475|42935670 hsa-miR-192-5p 0 0 1
chr6:42934475|42935670 hsa-miR-192-3p 0 0 1
chr6:42934475|42935670 hsa-miR-183-5p 0 0 1
chr6:42934475|42935670 hsa-miR-183-3p 0 0 1
chr6:42934475|42935670 hsa-miR-215-5p 0 0 1
chr6:42934475|42935670 hsa-miR-215-3p 0 0 1
chr6:42934475|42935670 hsa-miR-224-5p 0 0 1
chr6:42934475|42935670 hsa-miR-224-3p 0 0 1
chr6:42934475|42935670 hsa-miR-143-5p 0 0 1
chr6:42934475|42935670 hsa-miR-143-3p 0 0 1
chr6:42934475|42935670 hsa-miR-431-5p 0 0 1
chr6:42934475|42935670 hsa-miR-431-3p 0 0 1
chr6:42934475|42935670 hsa-miR-564 0 0 1
chr6:42934475|42935670 hsa-miR-596 0 0 1
chr6:42934475|42935670 hsa-miR-657 0 0 1
chr6:42934475|42935670 hsa-miR-1271-5p 0 0 1
chr6:42934475|42935670 hsa-miR-1271-3p 0 0 1
chr6:42934475|42935670 hsa-miR-1304-5p 0 0 1
chr6:42934475|42935670 hsa-miR-1304-3p 0 0 1
chr6:42934475|42935670 hsa-miR-769-5p 0 0 1
chr6:42934475|42935670 hsa-miR-1224-5p 0 0 1
chr6:42934475|42935670 hsa-miR-486-3p 0 0 1
chr6:42934475|42935670 hsa-miR-223-5p 0 1 1
chr6:42934475|42935670 hsa-miR-1289 0 0 1
chr6:42934475|42935670 hsa-miR-361-3p 0 1 1
chr6:42934475|42935670 hsa-miR-509-3p 1 1 1
chr6:42934475|42935670 hsa-miR-576-3p 0 0 1
chr6:42934475|42935670 hsa-miR-1207-5p 1 0 1
chr6:42934475|42935670 hsa-miR-450b-5p 0 1 1
chr6:42934475|42935670 hsa-miR-220c 0 0 1
chr6:42934475|42935670 hsa-miR-516b 0 0 1
chr6:42934475|42935670 hsa-miR-557 1 0 0
chr6:42934475|42935670 hsa-miR-617 0 1 0
chr6:42934475|42935670 hsa-miR-661 1 0 0
chr6:42934475|42935670 hsa-miR-762 0 1 0
chr6:42934475|42935670 hsa-miR-1469 1 0 0
chr6:42934475|42935670 hsa-miR-3154 1 0 0
chr6:42934475|42935670 hsa-miR-4306 1 0 0
chr6:42934475|42935670 hsa-miR-4260 0 1 0
chr6:42934475|42935670 hsa-miR-4326 0 1 0
chr6:42934475|42935670 hsa-miR-4327 1 0 0
chr6:42934475|42935670 hsa-miR-3652 0 1 0
chr6:42934475|42935670 hsa-miR-3665 0 1 0
chr6:42934475|42935670 hsa-miR-3921 0 1 0
chr6:42934475|42935670 hsa-miR-4420 0 1 0
chr6:42934475|42935670 hsa-miR-4421 0 1 0
chr6:42934475|42935670 hsa-miR-4430 0 1 0
chr6:42934475|42935670 hsa-miR-4441 0 1 0
chr6:42934475|42935670 hsa-miR-4457 1 1 0
chr6:42934475|42935670 hsa-miR-4471 0 1 0
chr6:42934475|42935670 hsa-miR-4493 0 1 0
chr6:42934475|42935670 hsa-miR-4496 0 1 0
chr6:42934475|42935670 hsa-miR-4498 0 1 0
chr6:42934475|42935670 hsa-miR-4634 1 0 0
chr6:42934475|42935670 hsa-miR-4656 1 0 0
chr6:42934475|42935670 hsa-miR-4689 1 0 0
chr6:42934475|42935670 hsa-miR-4739 1 0 0
chr6:42934475|42935670 hsa-miR-4751 1 1 0
chr6:42934475|42935670 hsa-miR-5100 0 1 0
chr6:42934475|42935670 hsa-miR-5572 0 1 0
chr6:42934475|42935670 hsa-miR-6088 1 0 0
chr6:42934475|42935670 hsa-miR-378j 0 1 0
chr6:42934475|42935670 hsa-miR-6165 1 0 0
chr6:42934475|42935670 hsa-miR-8072 1 0 0
chr6:42934475|42935670 hsa-miR-12115 1 1 0
chr6:42934475|42935670 hsa-miR-134-5p 1 0 0
chr6:42934475|42935670 hsa-miR-150-3p 1 0 0
chr6:42934475|42935670 hsa-miR-671-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6825-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6799-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6728-5p 1 0 0
chr6:42934475|42935670 hsa-miR-4786-5p 1 0 0
chr6:42934475|42935670 hsa-miR-7114-5p 1 1 0
chr6:42934475|42935670 hsa-miR-6875-3p 0 1 0
chr6:42934475|42935670 hsa-miR-6721-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6783-5p 0 1 0
chr6:42934475|42935670 hsa-miR-6796-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6732-5p 1 0 0
chr6:42934475|42935670 hsa-miR-2467-5p 0 1 0
chr6:42934475|42935670 hsa-miR-3126-5p 0 1 0
chr6:42934475|42935670 hsa-miR-4793-3p 1 0 0
chr6:42934475|42935670 hsa-miR-6874-5p 1 1 0
chr6:42934475|42935670 hsa-miR-3150b-3p 0 1 0
chr6:42934475|42935670 hsa-miR-6735-3p 1 0 0
chr6:42934475|42935670 hsa-miR-3691-3p 0 1 0
chr6:42934475|42935670 hsa-miR-6786-5p 1 0 0
chr6:42934475|42935670 hsa-miR-1226-5p 1 0 0
chr6:42934475|42935670 hsa-miR-4738-3p 1 0 0
chr6:42934475|42935670 hsa-miR-4793-5p 0 1 0
chr6:42934475|42935670 hsa-miR-185-5p 1 0 0
chr6:42934475|42935670 hsa-miR-1908-5p 1 0 0
chr6:42934475|42935670 hsa-miR-4787-5p 1 0 0
chr6:42934475|42935670 hsa-miR-4446-3p 0 1 0
chr6:42934475|42935670 hsa-miR-6824-5p 1 0 0
chr6:42934475|42935670 hsa-miR-194-3p 1 0 0
chr6:42934475|42935670 hsa-miR-516b-5p 0 1 0
chr6:42934475|42935670 hsa-miR-4776-5p 0 1 0
chr6:42934475|42935670 hsa-miR-6870-3p 0 1 0
chr6:42934475|42935670 hsa-miR-4652-5p 0 1 0
chr6:42934475|42935670 hsa-miR-660-3p 0 1 0
chr6:42934475|42935670 hsa-miR-1238-3p 0 1 0
chr6:42934475|42935670 hsa-miR-1245b-3p 0 1 0
chr6:42934475|42935670 hsa-miR-518c-5p 0 1 0
chr6:42934475|42935670 hsa-miR-34c-3p 0 1 0
chr6:42934475|42935670 hsa-miR-4763-3p 1 1 0
chr6:42934475|42935670 hsa-miR-6775-5p 0 1 0
chr6:42934475|42935670 hsa-miR-6726-5p 1 1 0
chr6:42934475|42935670 hsa-miR-6752-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6754-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6803-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6851-5p 1 1 0
chr6:42934475|42935670 hsa-miR-6751-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6779-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6797-5p 1 1 0
chr6:42934475|42935670 hsa-miR-6808-5p 1 0 0
chr6:42934475|42935670 hsa-miR-4728-5p 0 1 0
chr6:42934475|42935670 hsa-miR-6780b-5p 1 0 0
chr6:42934475|42935670 hsa-miR-328-5p 1 0 0
chr6:42934475|42935670 hsa-miR-4726-5p 1 1 0
chr6:42934475|42935670 hsa-miR-6729-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6858-5p 1 1 0
chr6:42934475|42935670 hsa-miR-939-5p 1 0 0
chr6:42934475|42935670 hsa-miR-6856-5p 1 0 0
chr6:42934475|42935670 hsa-miR-3173-3p 1 1 0
chr6:42934475|42935670 hsa-miR-6891-5p 0 1 0
chr6:42934475|42935670 hsa-miR-4757-5p 0 1 0
chr6:42934475|42935670 hsa-miR-6819-3p 1 0 0
chr6:42934475|42935670 hsa-miR-6891-3p 0 1 0
chr6:42934475|42935670 hsa-miR-6744-3p 0 1 0
chr6:42934475|42935670 hsa-miR-4691-5p 1 1 0
chr6:42934475|42935670 hsa-miR-6848-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:42934475|42935670
ORF Type ORF1
Protein Length 79
Nucleotide Length 237
Protein Sequence MTYLPSSSESLPIGEMCRCWGTGLEGQTTNPLRLGGELSSSSSCLGRDLRLIEVTETICKRLLDYSLHKERTGSNRFAK
Nucleotide Sequence ATGACCTATCTTCCTTCCAGCTCTGAGTCACTTCCCATTGGTGAGATGTGCAGGTGTTGGGGCACAGGGCTGGAGGGACAGACCACTAACCCACTGCGGCTAGGAGGGGAACTCAGTTCCTCATCCTCCTGTCTTGGCAGGGACTTGCGGTTAATCGAAGTCACTGAGACCATTTGCAAGAGGCTCCTGGATTATAGCCTGCACAAGGAGAGGACCGGCAGCAATCGATTTGCCAAG
CircID chr6:42934475|42935670
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MVSVTSINRKSLPRQEDEELSSPPSRSGLVVCPSSPVPQHLHISPMGSDSELEGR*
Nucleotide Sequence ATGGTCTCAGTGACTTCGATTAACCGCAAGTCCCTGCCAAGACAGGAGGATGAGGAACTGAGTTCCCCTCCTAGCCGCAGTGGGTTAGTGGTCTGTCCCTCCAGCCCTGTGCCCCAACACCTGCACATCTCACCAATGGGAAGTGACTCAGAGCTGGAAGGAAGATAG
CircID chr6:42934475|42935670
ORF Type ORF1
Protein Length 57
Nucleotide Length 174
Protein Sequence MQMVSVTSINRKSLPRQEDEELSSPPSRSGLVVCPSSPVPQHLHISPMGSDSELEGR
Nucleotide Sequence TTGCAAATGGTCTCAGTGACTTCGATTAACCGCAAGTCCCTGCCAAGACAGGAGGATGAGGAACTGAGTTCCCCTCCTAGCCGCAGTGGGTTAGTGGTCTGTCCCTCCAGCCCTGTGCCCCAACACCTGCACATCTCACCAATGGGAAGTGACTCAGAGCTGGAAGGAAGATAG
CircID chr6:42934475|42935670
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MCPNTCTSHQWEVTQSWKEDRSSGLGDLKWTWCI
Nucleotide Sequence CTGTGCCCCAACACCTGCACATCTCACCAATGGGAAGTGACTCAGAGCTGGAAGGAAGATAGGTCATCTGGTCTGGGGGATCTGAAATGGACTTGGTGTATTTGA
CircID chr6:42934475|42935670
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MARAMASWTRRPLESNTPSPFQIPQTR
Nucleotide Sequence TTGGCACGGGCTATGGCATCCTGGACCAGAAGGCCTCTGGAGTCAAATACACCAAGTCCATTTCAGATCCCCCAGACCAGATGA
CircID chr6:42934475|42935670
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MSHFPLVRCAGVGAQGWRDRPLTHCG
Nucleotide Sequence CTGAGTCACTTCCCATTGGTGAGATGTGCAGGTGTTGGGGCACAGGGCTGGAGGGACAGACCACTAACCCACTGCGGCTAG
CircID chr6:42934475|42935670
ORF Type ORF5
Protein Length 120
Nucleotide Length 360
Protein Sequence MKSAFEETGKTKEVIGTGYGILDQKASGVKYTKSISDPPDQMTYLPSSSESLPIGEMCRCWGTGLEGQTTNPLRLGGELSSSSSCLGRDLRLIEVTETICKRLLDYSLHKERTGSNRFAK
Nucleotide Sequence CTGAAGTCAGCCTTTGAGGAAACCGGCAAGACCAAGGAGGTGATTGGCACGGGCTATGGCATCCTGGACCAGAAGGCCTCTGGAGTCAAATACACCAAGTCCATTTCAGATCCCCCAGACCAGATGACCTATCTTCCTTCCAGCTCTGAGTCACTTCCCATTGGTGAGATGTGCAGGTGTTGGGGCACAGGGCTGGAGGGACAGACCACTAACCCACTGCGGCTAGGAGGGGAACTCAGTTCCTCATCCTCCTGTCTTGGCAGGGACTTGCGGTTAATCGAAGTCACTGAGACCATTTGCAAGAGGCTCCTGGATTATAGCCTGCACAAGGAGAGGACCGGCAGCAATCGATTTGCCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr6:42934475|42935670 NOP56 1 0 0
chr6:42934475|42935670 MOV10 0 4 0
chr6:42934475|42935670 ELAVL1 1 1 2
chr6:42934475|42935670 SF3B4 1 0 2
chr6:42934475|42935670 FAM120A 0 0 1
chr6:42934475|42935670 KHDRBS1 1 1 0
chr6:42934475|42935670 CELF2 0 1 0
chr6:42934475|42935670 PRPF8 0 3 2
chr6:42934475|42935670 YTHDF1 0 1 0
chr6:42934475|42935670 UPF1 0 5 0
chr6:42934475|42935670 TAF15 0 3 0
chr6:42934475|42935670 FMR1 0 1 0
chr6:42934475|42935670 TIA1 0 1 0
chr6:42934475|42935670 FUS 1 0 0
chr6:42934475|42935670 DGCR8 0 1 0
chr6:42934475|42935670 SRSF7 0 2 0
chr6:42934475|42935670 SRSF1 0 2 2
chr6:42934475|42935670 NOP58 1 1 4
chr6:42934475|42935670 SRSF3 0 1 0
chr6:42934475|42935670 U2AF1 0 0 2
chr6:42934475|42935670 U2AF2 8 2 0
chr6:42934475|42935670 SRSF9 0 0 1
chr6:42934475|42935670 DDX54 0 0 1
chr6:42934475|42935670 LSM11 0 1 0
chr6:42934475|42935670 HNRNPL 0 2 0
chr6:42934475|42935670 HNRNPA2B1 0 1 0
chr6:42934475|42935670 SF3A3 1 0 2
chr6:42934475|42935670 PTBP1 1 1 0
chr6:42934475|42935670 HNRNPC 0 1 0
chr6:42934475|42935670 TRA2A 0 0 1
chr6:42934475|42935670 DDX3X 0 0 1
chr6:42934475|42935670 LARP4B 0 4 0
chr6:42934475|42935670 SMNDC1 1 0 0
chr6:42934475|42935670 MSI2 0 0 3
chr6:42934475|42935670 HNRNPA1 1 0 0
chr6:42934475|42935670 LIN28B 0 2 3
chr6:42934475|42935670 LIN28A 0 2 0
chr6:42934475|42935670 SND1 0 0 1
chr6:42934475|42935670 IGF2BP1 0 2 1
chr6:42934475|42935670 IGF2BP3 0 1 0
chr6:42934475|42935670 IGF2BP2 3 7 3
chr6:42934475|42935670 TARDBP 0 3 0
chr6:42934475|42935670 DICER1 1 2 0
chr6:42934475|42935670 RBFOX2 0 2 0
chr6:42934475|42935670 YWHAG 0 1 0
chr6:42934475|42935670 TARBP2 1 0 0
chr6:42934475|42935670 ILF3 0 1 0
chr6:42934475|42935670 TIAL1 0 1 0
chr6:42934475|42935670 DKC1 1 1 0
chr6:42934475|42935670 FBL 0 0 3
chr6:42934475|42935670 AGO1 0 3 0
chr6:42934475|42935670 EIF4A3 3 5 4
chr6:42934475|42935670 AGO2 0 10 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab