CircRNA Information

General Information
circRNA Basic Information
CircID chr6:42979052|42979218
Strand +
CircType exon
Host Gene ENSG00000124587.12;
Algorism CIRI2;
Sequence ACTAGTCGTCTGGCTCTCTGGCTCCGGAAGCTGCGCTCCTTCACCCTCCTCGTTGGTGTCCTGTCACCATGGCGCTGGCTGTCTTGCGGGTCCTGGAGCCCTTTCCGACCGAGACACCCCCGTTGGCAGTGCTGCTGCCACCCGGGGGCCCGTGGCCGGCGGCGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:42979052|42979218 hsa-miR-15a-5p 0 0 1
chr6:42979052|42979218 hsa-miR-15a-3p 0 0 1
chr6:42979052|42979218 hsa-miR-15b-5p 0 0 1
chr6:42979052|42979218 hsa-miR-15b-3p 0 0 1
chr6:42979052|42979218 hsa-miR-195-5p 0 0 1
chr6:42979052|42979218 hsa-miR-195-3p 0 0 1
chr6:42979052|42979218 hsa-miR-424-5p 0 0 1
chr6:42979052|42979218 hsa-miR-424-3p 0 0 1
chr6:42979052|42979218 hsa-miR-497-5p 0 0 1
chr6:42979052|42979218 hsa-miR-497-3p 0 0 1
chr6:42979052|42979218 hsa-miR-665 0 0 1
chr6:42979052|42979218 hsa-miR-1203 1 1 1
chr6:42979052|42979218 hsa-miR-1252-5p 0 0 1
chr6:42979052|42979218 hsa-miR-1252-3p 0 0 1
chr6:42979052|42979218 hsa-miR-1197 0 0 1
chr6:42979052|42979218 hsa-miR-296-5p 0 0 1
chr6:42979052|42979218 hsa-miR-885-3p 0 0 1
chr6:42979052|42979218 hsa-miR-542-3p 0 0 1
chr6:42979052|42979218 hsa-miR-151-5p 0 0 1
chr6:42979052|42979218 hsa-miR-16 0 0 1
chr6:42979052|42979218 hsa-miR-492 0 1 0
chr6:42979052|42979218 hsa-miR-608 1 0 0
chr6:42979052|42979218 hsa-miR-1200 1 0 0
chr6:42979052|42979218 hsa-miR-3131 1 0 0
chr6:42979052|42979218 hsa-miR-4436a 0 1 0
chr6:42979052|42979218 hsa-miR-4651 1 0 0
chr6:42979052|42979218 hsa-miR-4696 0 1 0
chr6:42979052|42979218 hsa-miR-4721 1 1 0
chr6:42979052|42979218 hsa-miR-4739 1 0 0
chr6:42979052|42979218 hsa-miR-4741 1 0 0
chr6:42979052|42979218 hsa-miR-5681a 0 1 0
chr6:42979052|42979218 hsa-miR-5705 1 0 0
chr6:42979052|42979218 hsa-miR-6765-5p 1 0 0
chr6:42979052|42979218 hsa-miR-6825-5p 1 0 0
chr6:42979052|42979218 hsa-miR-6894-5p 1 0 0
chr6:42979052|42979218 hsa-miR-505-5p 1 1 0
chr6:42979052|42979218 hsa-miR-6840-5p 0 1 0
chr6:42979052|42979218 hsa-miR-3180-3p 1 0 0
chr6:42979052|42979218 hsa-miR-6772-5p 1 0 0
chr6:42979052|42979218 hsa-miR-6858-3p 0 1 0
chr6:42979052|42979218 hsa-miR-5088-5p 0 1 0
chr6:42979052|42979218 hsa-miR-4640-5p 1 1 0
chr6:42979052|42979218 hsa-miR-92b-5p 1 0 0
chr6:42979052|42979218 hsa-miR-4787-5p 1 1 0
chr6:42979052|42979218 hsa-miR-149-3p 1 0 0
chr6:42979052|42979218 hsa-miR-5000-3p 0 1 0
chr6:42979052|42979218 hsa-miR-383-3p 0 1 0
chr6:42979052|42979218 hsa-miR-16-5p 0 1 0
chr6:42979052|42979218 hsa-miR-6778-5p 1 0 0
chr6:42979052|42979218 hsa-miR-6812-5p 1 0 0
chr6:42979052|42979218 hsa-miR-6865-5p 1 0 0
chr6:42979052|42979218 hsa-miR-3180 1 0 0
chr6:42979052|42979218 hsa-miR-6752-5p 1 1 0
chr6:42979052|42979218 hsa-miR-6803-5p 1 0 0
chr6:42979052|42979218 hsa-miR-6842-5p 0 1 0
chr6:42979052|42979218 hsa-miR-7110-5p 0 1 0
chr6:42979052|42979218 hsa-miR-1249-5p 1 0 0
chr6:42979052|42979218 hsa-miR-6751-5p 1 0 0
chr6:42979052|42979218 hsa-miR-6780a-5p 1 0 0
chr6:42979052|42979218 hsa-miR-6797-5p 1 0 0
chr6:42979052|42979218 hsa-miR-4728-5p 1 0 0
chr6:42979052|42979218 hsa-miR-4726-5p 1 1 0
chr6:42979052|42979218 hsa-miR-4745-5p 1 0 0
chr6:42979052|42979218 hsa-miR-6858-5p 1 0 0
chr6:42979052|42979218 hsa-miR-6889-5p 1 0 0
chr6:42979052|42979218 hsa-miR-10398-3p 1 0 0
chr6:42979052|42979218 hsa-miR-6837-5p 0 1 0
chr6:42979052|42979218 hsa-miR-9851-3p 0 1 0
chr6:42979052|42979218 hsa-miR-6838-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr6:42979052|42979218
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MALWLRKLRSFTLLVGVLSPWRWLSCGSWSPFRPRHPRWQCCCHPGARGRRR
Nucleotide Sequence CTGGCTCTCTGGCTCCGGAAGCTGCGCTCCTTCACCCTCCTCGTTGGTGTCCTGTCACCATGGCGCTGGCTGTCTTGCGGGTCCTGGAGCCCTTTCCGACCGAGACACCCCCGTTGGCAGTGCTGCTGCCACCCGGGGGCCCGTGGCCGGCGGCGG

CircID chr6:42979052|42979218
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MVSCHHGAGCLAGPGALSDRDTPVGSAAATRGPVAGGG
Nucleotide Sequence TTGGTGTCCTGTCACCATGGCGCTGGCTGTCTTGCGGGTCCTGGAGCCCTTTCCGACCGAGACACCCCCGTTGGCAGTGCTGCTGCCACCCGGGGGCCCGTGGCCGGCGGCGGA

CircID chr6:42979052|42979218
ORF Type ORF3
Protein Length 50
Nucleotide Length 150
Protein Sequence MAPEAALLHPPRWCPVTMALAVLRVLEPFPTETPPLAVLLPPGGPWPAAE
Nucleotide Sequence CTGGCTCCGGAAGCTGCGCTCCTTCACCCTCCTCGTTGGTGTCCTGTCACCATGGCGCTGGCTGTCTTGCGGGTCCTGGAGCCCTTTCCGACCGAGACACCCCCGTTGGCAGTGCTGCTGCCACCCGGGGGCCCGTGGCCGGCGGCGGAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites