CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43019109|43019347
Strand +
CircType exon
Host Gene ENSG00000124702.16;
Algorism CIRI2;
Sequence AGGACTGGTCTAGGTTATACTGAATCACGGCCAGTTTGCACAGAGTCTTCAGACTAGGGCCTTTAAGGGAGAAGTTGTGGAAAGGAGATGGTCAAAGGTGAGGAAAGGATCCAGTCCTGGATATCACCACCCAAAGACAGGGACCTTGATGGCAGGAGCAATTCAGGAATAACTATACTTACTAAAGTCCAAAATGTGTAAGTCAGAATGATCTATAAGGTCAAATTCATCTCCCAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43019109|43019347 hsa-miR-19a-5p 0 0 1
chr6:43019109|43019347 hsa-miR-19a-3p 0 0 1
chr6:43019109|43019347 hsa-miR-192-5p 0 0 1
chr6:43019109|43019347 hsa-miR-192-3p 0 0 1
chr6:43019109|43019347 hsa-miR-215-5p 0 0 1
chr6:43019109|43019347 hsa-miR-215-3p 0 0 1
chr6:43019109|43019347 hsa-miR-143-5p 0 0 1
chr6:43019109|43019347 hsa-miR-143-3p 0 0 1
chr6:43019109|43019347 hsa-miR-345-5p 0 0 1
chr6:43019109|43019347 hsa-miR-345-3p 0 0 1
chr6:43019109|43019347 hsa-miR-511-5p 0 0 1
chr6:43019109|43019347 hsa-miR-511-3p 0 0 1
chr6:43019109|43019347 hsa-miR-193b-5p 0 0 1
chr6:43019109|43019347 hsa-miR-193b-3p 0 0 1
chr6:43019109|43019347 hsa-miR-591 0 0 1
chr6:43019109|43019347 hsa-miR-661 0 0 1
chr6:43019109|43019347 hsa-miR-665 0 0 1
chr6:43019109|43019347 hsa-miR-1238-5p 0 0 1
chr6:43019109|43019347 hsa-miR-1238-3p 0 0 1
chr6:43019109|43019347 hsa-miR-1200 0 0 1
chr6:43019109|43019347 hsa-miR-1293 0 0 1
chr6:43019109|43019347 hsa-miR-1243 0 0 1
chr6:43019109|43019347 hsa-miR-1262 0 0 1
chr6:43019109|43019347 hsa-miR-302f 0 0 1
chr6:43019109|43019347 hsa-miR-339-5p 1 0 1
chr6:43019109|43019347 hsa-miR-501-5p 0 0 1
chr6:43019109|43019347 hsa-miR-193a-3p 0 0 1
chr6:43019109|43019347 hsa-miR-1274a 0 0 1
chr6:43019109|43019347 hsa-miR-1274b 0 0 1
chr6:43019109|43019347 hsa-miR-9 0 0 1
chr6:43019109|43019347 hsa-miR-1269 0 0 1
chr6:43019109|43019347 hsa-miR-19b 0 0 1
chr6:43019109|43019347 hsa-miR-219-2-3p 0 0 1
chr6:43019109|43019347 hsa-miR-1291 1 1 0
chr6:43019109|43019347 hsa-miR-1321 1 0 0
chr6:43019109|43019347 hsa-miR-3169 0 1 0
chr6:43019109|43019347 hsa-miR-4287 0 1 0
chr6:43019109|43019347 hsa-miR-4421 0 1 0
chr6:43019109|43019347 hsa-miR-4432 0 1 0
chr6:43019109|43019347 hsa-miR-3689e 0 1 0
chr6:43019109|43019347 hsa-miR-4515 0 1 0
chr6:43019109|43019347 hsa-miR-4522 0 1 0
chr6:43019109|43019347 hsa-miR-8058 1 0 0
chr6:43019109|43019347 hsa-miR-4700-3p 1 1 0
chr6:43019109|43019347 hsa-miR-7851-3p 0 1 0
chr6:43019109|43019347 hsa-miR-6748-5p 1 0 0
chr6:43019109|43019347 hsa-miR-30b-3p 0 1 0
chr6:43019109|43019347 hsa-miR-6884-3p 1 0 0
chr6:43019109|43019347 hsa-miR-6772-3p 0 1 0
chr6:43019109|43019347 hsa-miR-30c-2-3p 0 1 0
chr6:43019109|43019347 hsa-miR-4776-3p 1 1 0
chr6:43019109|43019347 hsa-miR-3619-3p 1 0 0
chr6:43019109|43019347 hsa-miR-6782-3p 0 1 0
chr6:43019109|43019347 hsa-miR-4529-5p 1 0 0
chr6:43019109|43019347 hsa-miR-328-3p 1 0 0
chr6:43019109|43019347 hsa-miR-3124-3p 0 1 0
chr6:43019109|43019347 hsa-miR-6768-3p 0 1 0
chr6:43019109|43019347 hsa-miR-6510-3p 1 0 0
chr6:43019109|43019347 hsa-miR-6502-3p 1 0 0
chr6:43019109|43019347 hsa-miR-6831-3p 1 0 0
chr6:43019109|43019347 hsa-miR-6788-5p 0 1 0
chr6:43019109|43019347 hsa-miR-4685-3p 1 1 0
chr6:43019109|43019347 hsa-miR-30c-1-3p 0 1 0
chr6:43019109|43019347 hsa-miR-4722-3p 1 1 0
chr6:43019109|43019347 hsa-miR-6862-3p 1 0 0
chr6:43019109|43019347 hsa-miR-6891-3p 1 0 0
chr6:43019109|43019347 hsa-miR-6827-3p 1 0 0
chr6:43019109|43019347 hsa-miR-4769-3p 0 1 0
chr6:43019109|43019347 hsa-miR-5699-3p 0 1 0
chr6:43019109|43019347 hsa-miR-3689a-5p 0 1 0
chr6:43019109|43019347 hsa-miR-3689b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:43019109|43019347
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MVKGEERIQSWISPPKDRDLDGRSNSGITILTKVQNV
Nucleotide Sequence ATGGTCAAAGGTGAGGAAAGGATCCAGTCCTGGATATCACCACCCAAAGACAGGGACCTTGATGGCAGGAGCAATTCAGGAATAACTATACTTACTAAAGTCCAAAATGTGTAA
CircID chr6:43019109|43019347
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MNHGQFAQSLQTRAFKGEVVERRWSKVRKGSSPGYHHPKTGTLMAGAIQE
Nucleotide Sequence CTGAATCACGGCCAGTTTGCACAGAGTCTTCAGACTAGGGCCTTTAAGGGAGAAGTTGTGGAAAGGAGATGGTCAAAGGTGAGGAAAGGATCCAGTCCTGGATATCACCACCCAAAGACAGGGACCTTGATGGCAGGAGCAATTCAGGAATAA
CircID chr6:43019109|43019347
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MTYTFWTLVSIVIPELLLPSRSLSLGGDIQDWILSSPLTISFPQLLP
Nucleotide Sequence CTGACTTACACATTTTGGACTTTAGTAAGTATAGTTATTCCTGAATTGCTCCTGCCATCAAGGTCCCTGTCTTTGGGTGGTGATATCCAGGACTGGATCCTTTCCTCACCTTTGACCATCTCCTTTCCACAACTTCTCCCTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab