CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43047003|43047235
Strand +
CircType exon
Host Gene ENSG00000044090.7;
Algorism CIRI2;
Sequence TCTGCCTTGCTCACTGTAGCACCCCTAGCACCCAGTACACAGAGTACACAGTGGGTACCTGCTACTGCAGGTGCCCTTGTGGCCCTCGCCCTGTCTTCATTCATCTCCTCCCTTATGTCCCCACCCAGGTGCTCCAGGAACTGATTTTCTTCCTGCACCGCCTGACCTCAGTGAGCAGGGACTATGCCGTGGTGCTGAATCAGCTGGGAGCAAGAGACGCTATCTCCAAGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43047003|43047235 hsa-miR-29a-5p 0 0 1
chr6:43047003|43047235 hsa-miR-29a-3p 0 0 1
chr6:43047003|43047235 hsa-miR-221-5p 0 0 1
chr6:43047003|43047235 hsa-miR-221-3p 0 0 1
chr6:43047003|43047235 hsa-miR-222-5p 0 0 1
chr6:43047003|43047235 hsa-miR-222-3p 0 0 1
chr6:43047003|43047235 hsa-miR-143-5p 0 0 1
chr6:43047003|43047235 hsa-miR-143-3p 0 0 1
chr6:43047003|43047235 hsa-miR-29c-5p 0 0 1
chr6:43047003|43047235 hsa-miR-29c-3p 0 0 1
chr6:43047003|43047235 hsa-miR-432-5p 0 0 1
chr6:43047003|43047235 hsa-miR-432-3p 0 0 1
chr6:43047003|43047235 hsa-miR-620 0 0 1
chr6:43047003|43047235 hsa-miR-765 1 1 1
chr6:43047003|43047235 hsa-miR-892a 0 1 1
chr6:43047003|43047235 hsa-miR-1178-5p 0 0 1
chr6:43047003|43047235 hsa-miR-1178-3p 0 0 1
chr6:43047003|43047235 hsa-miR-1286 0 0 1
chr6:43047003|43047235 hsa-miR-1293 1 0 1
chr6:43047003|43047235 hsa-miR-1270 0 0 1
chr6:43047003|43047235 hsa-miR-1321 1 1 1
chr6:43047003|43047235 hsa-miR-139-5p 0 0 1
chr6:43047003|43047235 hsa-miR-491-5p 1 0 1
chr6:43047003|43047235 hsa-miR-767-3p 0 0 1
chr6:43047003|43047235 hsa-miR-342-5p 1 1 1
chr6:43047003|43047235 hsa-miR-29b 0 0 1
chr6:43047003|43047235 hsa-miR-637 1 0 0
chr6:43047003|43047235 hsa-miR-762 1 0 0
chr6:43047003|43047235 hsa-miR-764 0 1 0
chr6:43047003|43047235 hsa-miR-3122 1 0 0
chr6:43047003|43047235 hsa-miR-4298 0 1 0
chr6:43047003|43047235 hsa-miR-4271 1 0 0
chr6:43047003|43047235 hsa-miR-3907 1 0 0
chr6:43047003|43047235 hsa-miR-3936 1 0 0
chr6:43047003|43047235 hsa-miR-3937 1 1 0
chr6:43047003|43047235 hsa-miR-3945 1 1 0
chr6:43047003|43047235 hsa-miR-4441 1 1 0
chr6:43047003|43047235 hsa-miR-4450 1 0 0
chr6:43047003|43047235 hsa-miR-4476 1 0 0
chr6:43047003|43047235 hsa-miR-4507 1 0 0
chr6:43047003|43047235 hsa-miR-4510 1 1 0
chr6:43047003|43047235 hsa-miR-4534 1 0 0
chr6:43047003|43047235 hsa-miR-4642 1 0 0
chr6:43047003|43047235 hsa-miR-4651 1 0 0
chr6:43047003|43047235 hsa-miR-4689 1 0 0
chr6:43047003|43047235 hsa-miR-4706 1 0 0
chr6:43047003|43047235 hsa-miR-4739 1 1 0
chr6:43047003|43047235 hsa-miR-4784 1 1 0
chr6:43047003|43047235 hsa-miR-5093 1 0 0
chr6:43047003|43047235 hsa-miR-5194 1 0 0
chr6:43047003|43047235 hsa-miR-5572 1 0 0
chr6:43047003|43047235 hsa-miR-5698 1 0 0
chr6:43047003|43047235 hsa-miR-5787 1 0 0
chr6:43047003|43047235 hsa-miR-6069 1 0 0
chr6:43047003|43047235 hsa-miR-6088 1 1 0
chr6:43047003|43047235 hsa-miR-6127 1 0 0
chr6:43047003|43047235 hsa-miR-6133 1 0 0
chr6:43047003|43047235 hsa-miR-6745 1 0 0
chr6:43047003|43047235 hsa-miR-7150 1 0 0
chr6:43047003|43047235 hsa-miR-8085 1 0 0
chr6:43047003|43047235 hsa-miR-8089 1 0 0
chr6:43047003|43047235 hsa-miR-12118 1 0 0
chr6:43047003|43047235 hsa-miR-12131 0 1 0
chr6:43047003|43047235 hsa-miR-17-3p 0 1 0
chr6:43047003|43047235 hsa-miR-92a-2-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6734-5p 1 0 0
chr6:43047003|43047235 hsa-miR-4731-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6747-5p 1 0 0
chr6:43047003|43047235 hsa-miR-3150a-3p 1 0 0
chr6:43047003|43047235 hsa-miR-6861-5p 1 0 0
chr6:43047003|43047235 hsa-miR-7106-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6825-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6894-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6857-5p 1 0 0
chr6:43047003|43047235 hsa-miR-25-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6799-5p 1 0 0
chr6:43047003|43047235 hsa-miR-766-5p 1 0 0
chr6:43047003|43047235 hsa-miR-7851-3p 1 0 0
chr6:43047003|43047235 hsa-miR-5187-5p 1 0 0
chr6:43047003|43047235 hsa-miR-1227-5p 1 0 0
chr6:43047003|43047235 hsa-miR-7847-3p 1 0 0
chr6:43047003|43047235 hsa-miR-7160-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6820-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6741-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6727-5p 1 0 0
chr6:43047003|43047235 hsa-miR-3622b-5p 1 0 0
chr6:43047003|43047235 hsa-miR-8069 1 0 0
chr6:43047003|43047235 hsa-miR-5589-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6776-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6742-5p 1 0 0
chr6:43047003|43047235 hsa-miR-3151-5p 1 0 0
chr6:43047003|43047235 hsa-miR-3180-3p 1 0 0
chr6:43047003|43047235 hsa-miR-6732-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6760-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6782-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6765-3p 0 1 0
chr6:43047003|43047235 hsa-miR-6888-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6810-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6786-5p 1 0 0
chr6:43047003|43047235 hsa-miR-7109-5p 1 0 0
chr6:43047003|43047235 hsa-miR-1226-5p 1 0 0
chr6:43047003|43047235 hsa-miR-1229-5p 1 0 0
chr6:43047003|43047235 hsa-miR-4640-5p 1 0 0
chr6:43047003|43047235 hsa-miR-3691-5p 1 0 0
chr6:43047003|43047235 hsa-miR-1908-5p 1 0 0
chr6:43047003|43047235 hsa-miR-1228-5p 1 0 0
chr6:43047003|43047235 hsa-miR-92b-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6516-5p 0 1 0
chr6:43047003|43047235 hsa-miR-7854-3p 1 0 0
chr6:43047003|43047235 hsa-miR-6818-3p 0 1 0
chr6:43047003|43047235 hsa-miR-4787-5p 1 0 0
chr6:43047003|43047235 hsa-miR-149-3p 1 0 0
chr6:43047003|43047235 hsa-miR-6824-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6789-5p 1 0 0
chr6:43047003|43047235 hsa-miR-3162-5p 0 1 0
chr6:43047003|43047235 hsa-miR-6892-5p 1 1 0
chr6:43047003|43047235 hsa-miR-3065-3p 0 1 0
chr6:43047003|43047235 hsa-miR-3191-3p 1 0 0
chr6:43047003|43047235 hsa-miR-2114-5p 0 1 0
chr6:43047003|43047235 hsa-miR-584-3p 0 1 0
chr6:43047003|43047235 hsa-miR-6720-3p 0 1 0
chr6:43047003|43047235 hsa-miR-5004-5p 1 0 0
chr6:43047003|43047235 hsa-miR-500a-3p 1 0 0
chr6:43047003|43047235 hsa-miR-1207-5p 1 0 0
chr6:43047003|43047235 hsa-miR-1233-5p 1 0 0
chr6:43047003|43047235 hsa-miR-4763-3p 1 0 0
chr6:43047003|43047235 hsa-miR-6769b-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6778-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6870-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6775-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6726-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6752-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6754-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6756-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6769a-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6803-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6819-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6842-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6851-5p 1 0 0
chr6:43047003|43047235 hsa-miR-7110-5p 1 0 0
chr6:43047003|43047235 hsa-miR-11181-3p 1 0 0
chr6:43047003|43047235 hsa-miR-1249-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6751-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6763-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6779-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6780a-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6797-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6808-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6879-5p 1 0 0
chr6:43047003|43047235 hsa-miR-7111-5p 1 0 0
chr6:43047003|43047235 hsa-miR-3620-5p 1 0 0
chr6:43047003|43047235 hsa-miR-4728-5p 1 0 0
chr6:43047003|43047235 hsa-miR-5196-5p 1 0 0
chr6:43047003|43047235 hsa-miR-10526-3p 1 0 0
chr6:43047003|43047235 hsa-miR-328-5p 1 0 0
chr6:43047003|43047235 hsa-miR-4649-5p 1 1 0
chr6:43047003|43047235 hsa-miR-4701-3p 1 0 0
chr6:43047003|43047235 hsa-miR-4745-5p 1 0 0
chr6:43047003|43047235 hsa-miR-4749-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6729-5p 1 1 0
chr6:43047003|43047235 hsa-miR-675-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6795-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6883-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6887-5p 1 0 0
chr6:43047003|43047235 hsa-miR-4723-5p 1 0 0
chr6:43047003|43047235 hsa-miR-939-5p 1 0 0
chr6:43047003|43047235 hsa-miR-4758-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6511b-5p 1 0 0
chr6:43047003|43047235 hsa-miR-3940-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6856-5p 1 0 0
chr6:43047003|43047235 hsa-miR-4664-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6736-5p 1 0 0
chr6:43047003|43047235 hsa-miR-4700-5p 1 0 0
chr6:43047003|43047235 hsa-miR-3173-3p 1 0 0
chr6:43047003|43047235 hsa-miR-3679-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6876-5p 1 0 0
chr6:43047003|43047235 hsa-miR-6891-5p 1 0 0
chr6:43047003|43047235 hsa-miR-541-3p 1 0 0
chr6:43047003|43047235 hsa-miR-6766-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6785-5p 1 1 0
chr6:43047003|43047235 hsa-miR-6762-5p 1 0 0
chr6:43047003|43047235 hsa-miR-4756-5p 1 0 0
chr6:43047003|43047235 hsa-miR-217-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:43047003|43047235
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MLTVAPLAPSTQSTQWVPATAGALVALALSSFISSLMSPPRCSRN
Nucleotide Sequence TTGCTCACTGTAGCACCCCTAGCACCCAGTACACAGAGTACACAGTGGGTACCTGCTACTGCAGGTGCCCTTGTGGCCCTCGCCCTGTCTTCATTCATCTCCTCCCTTATGTCCCCACCCAGGTGCTCCAGGAACTGA
CircID chr6:43047003|43047235
ORF Type ORF2
Protein Length 58
Nucleotide Length 174
Protein Sequence MLLQVPLWPSPCLHSSPPLCPHPGAPGTDFLPAPPDLSEQGLCRGAESAGSKRRYLQG
Nucleotide Sequence CTGCTACTGCAGGTGCCCTTGTGGCCCTCGCCCTGTCTTCATTCATCTCCTCCCTTATGTCCCCACCCAGGTGCTCCAGGAACTGATTTTCTTCCTGCACCGCCTGACCTCAGTGAGCAGGGACTATGCCGTGGTGCTGAATCAGCTGGGAGCAAGAGACGCTATCTCCAAGGC
CircID chr6:43047003|43047235
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MIFFLHRLTSVSRDYAVVLNQLGARDAISKA
Nucleotide Sequence CTGATTTTCTTCCTGCACCGCCTGACCTCAGTGAGCAGGGACTATGCCGTGGTGCTGAATCAGCTGGGAGCAAGAGACGCTATCTCCAAGGCC
CircID chr6:43047003|43047235
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MEHLGGDIREEMNEDRARATRAPAVAGTHCVLCVLGARGATVSKA
Nucleotide Sequence CTGGAGCACCTGGGTGGGGACATAAGGGAGGAGATGAATGAAGACAGGGCGAGGGCCACAAGGGCACCTGCAGTAGCAGGTACCCACTGTGTACTCTGTGTACTGGGTGCTAGGGGTGCTACAGTGAGCAAGGCA
CircID chr6:43047003|43047235
ORF Type ORF5
Protein Length 38
Nucleotide Length 117
Protein Sequence MLPADSAPRHSPCSLRSGGAGRKSVPGAPGWGHKGGDE
Nucleotide Sequence TTGCTCCCAGCTGATTCAGCACCACGGCATAGTCCCTGCTCACTGAGGTCAGGCGGTGCAGGAAGAAAATCAGTTCCTGGAGCACCTGGGTGGGGACATAAGGGAGGAGATGAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab