CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43056178|43058090
Strand -
CircType exon
Host Gene ENSG00000112651.10;
Algorism CIRI2;
Sequence CAGAGCTATGTCTGCTGACCTAATCAGGGTGAGGGACAGGTAAGCAGACCGTCTAGGCAGCCCCACATCTTCTGAGAAGCTATGGAGTTATTCAGACCATTCCATCATCATCCCACATCCCAAACTTGCCTACAGGGATCATAGCGGACTTGGATAACCTTCTCCTCAAAGGGTCCTGACTTGGTCTCCTCAGGCCGGAAACGCAGAAAGTCAATCATTCGATAACGTTGCTTGTGGCCCCCGCCAATACCATGCACCCGGATTCGGCCTGTGTGGTCTCGGCCCCCAGACTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43056178|43058090 hsa-miR-214-5p 0 0 1
chr6:43056178|43058090 hsa-miR-214-3p 0 0 1
chr6:43056178|43058090 hsa-miR-154-5p 0 0 1
chr6:43056178|43058090 hsa-miR-154-3p 0 0 1
chr6:43056178|43058090 hsa-miR-206 0 0 1
chr6:43056178|43058090 hsa-miR-613 0 0 1
chr6:43056178|43058090 hsa-miR-637 1 0 1
chr6:43056178|43058090 hsa-miR-922 0 0 1
chr6:43056178|43058090 hsa-miR-1180-5p 0 0 1
chr6:43056178|43058090 hsa-miR-1180-3p 0 0 1
chr6:43056178|43058090 hsa-miR-1234-3p 0 0 1
chr6:43056178|43058090 hsa-miR-1304-5p 0 0 1
chr6:43056178|43058090 hsa-miR-1304-3p 0 0 1
chr6:43056178|43058090 hsa-miR-1272 0 1 1
chr6:43056178|43058090 hsa-miR-1234 0 0 1
chr6:43056178|43058090 hsa-miR-491-5p 0 0 1
chr6:43056178|43058090 hsa-miR-1224-5p 0 0 1
chr6:43056178|43058090 hsa-miR-299-3p 0 1 1
chr6:43056178|43058090 hsa-miR-339-5p 0 0 1
chr6:43056178|43058090 hsa-miR-483-5p 0 0 1
chr6:43056178|43058090 hsa-miR-576-3p 0 0 1
chr6:43056178|43058090 hsa-miR-769-3p 0 0 1
chr6:43056178|43058090 hsa-miR-450b-3p 0 0 1
chr6:43056178|43058090 hsa-miR-1274a 0 0 1
chr6:43056178|43058090 hsa-miR-1274b 0 0 1
chr6:43056178|43058090 hsa-miR-1 0 0 1
chr6:43056178|43058090 hsa-miR-544 0 0 1
chr6:43056178|43058090 hsa-miR-663 0 0 1
chr6:43056178|43058090 hsa-miR-636 1 0 0
chr6:43056178|43058090 hsa-miR-663a 1 1 0
chr6:43056178|43058090 hsa-miR-762 1 0 0
chr6:43056178|43058090 hsa-miR-1183 1 1 0
chr6:43056178|43058090 hsa-miR-1295a 1 0 0
chr6:43056178|43058090 hsa-miR-1268a 1 0 0
chr6:43056178|43058090 hsa-miR-1268b 1 0 0
chr6:43056178|43058090 hsa-miR-4466 1 0 0
chr6:43056178|43058090 hsa-miR-3689c 1 0 0
chr6:43056178|43058090 hsa-miR-4488 1 0 0
chr6:43056178|43058090 hsa-miR-4502 1 1 0
chr6:43056178|43058090 hsa-miR-4654 1 1 0
chr6:43056178|43058090 hsa-miR-4656 1 1 0
chr6:43056178|43058090 hsa-miR-4689 1 1 0
chr6:43056178|43058090 hsa-miR-4741 1 0 0
chr6:43056178|43058090 hsa-miR-5572 1 0 0
chr6:43056178|43058090 hsa-miR-9898 1 1 0
chr6:43056178|43058090 hsa-miR-12121 1 0 0
chr6:43056178|43058090 hsa-miR-128-1-5p 1 1 0
chr6:43056178|43058090 hsa-miR-4731-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6747-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6728-5p 1 1 0
chr6:43056178|43058090 hsa-miR-5187-5p 1 1 0
chr6:43056178|43058090 hsa-miR-4786-5p 0 1 0
chr6:43056178|43058090 hsa-miR-6089 1 0 0
chr6:43056178|43058090 hsa-miR-6741-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6776-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6742-5p 1 0 0
chr6:43056178|43058090 hsa-miR-3180-3p 1 0 0
chr6:43056178|43058090 hsa-miR-6796-5p 1 1 0
chr6:43056178|43058090 hsa-miR-185-3p 1 1 0
chr6:43056178|43058090 hsa-miR-6829-5p 1 1 0
chr6:43056178|43058090 hsa-miR-3667-5p 0 1 0
chr6:43056178|43058090 hsa-miR-3150b-3p 0 1 0
chr6:43056178|43058090 hsa-miR-6821-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6882-3p 1 1 0
chr6:43056178|43058090 hsa-miR-3691-3p 0 1 0
chr6:43056178|43058090 hsa-miR-6786-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6740-5p 1 1 0
chr6:43056178|43058090 hsa-miR-3944-3p 1 0 0
chr6:43056178|43058090 hsa-miR-4640-5p 1 0 0
chr6:43056178|43058090 hsa-miR-1908-5p 1 1 0
chr6:43056178|43058090 hsa-miR-1228-5p 1 0 0
chr6:43056178|43058090 hsa-miR-4787-5p 1 0 0
chr6:43056178|43058090 hsa-miR-1266-3p 1 1 0
chr6:43056178|43058090 hsa-miR-6717-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6824-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6802-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6877-5p 1 1 0
chr6:43056178|43058090 hsa-miR-4646-3p 0 1 0
chr6:43056178|43058090 hsa-miR-6854-3p 0 1 0
chr6:43056178|43058090 hsa-miR-1296-3p 1 0 0
chr6:43056178|43058090 hsa-miR-6748-3p 0 1 0
chr6:43056178|43058090 hsa-miR-10400-5p 1 0 0
chr6:43056178|43058090 hsa-miR-3689b-3p 1 0 0
chr6:43056178|43058090 hsa-miR-4763-3p 1 0 0
chr6:43056178|43058090 hsa-miR-6787-5p 1 1 0
chr6:43056178|43058090 hsa-miR-6812-5p 1 1 0
chr6:43056178|43058090 hsa-miR-6893-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6726-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6737-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6752-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6756-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6803-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6813-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6819-5p 1 0 0
chr6:43056178|43058090 hsa-miR-7107-5p 1 1 0
chr6:43056178|43058090 hsa-miR-7110-5p 1 0 0
chr6:43056178|43058090 hsa-miR-10401-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6751-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6808-5p 1 0 0
chr6:43056178|43058090 hsa-miR-10396b-5p 1 1 0
chr6:43056178|43058090 hsa-miR-1237-5p 1 0 0
chr6:43056178|43058090 hsa-miR-328-5p 1 0 0
chr6:43056178|43058090 hsa-miR-3689a-3p 1 0 0
chr6:43056178|43058090 hsa-miR-4685-5p 1 0 0
chr6:43056178|43058090 hsa-miR-4726-5p 1 0 0
chr6:43056178|43058090 hsa-miR-4745-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6846-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6848-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6858-5p 0 1 0
chr6:43056178|43058090 hsa-miR-6883-5p 1 0 0
chr6:43056178|43058090 hsa-miR-6845-5p 1 1 0
chr6:43056178|43058090 hsa-miR-4769-5p 1 1 0
chr6:43056178|43058090 hsa-miR-6855-5p 1 0 0
chr6:43056178|43058090 hsa-miR-7107-3p 0 1 0
chr6:43056178|43058090 hsa-miR-6762-5p 1 1 0
chr6:43056178|43058090 hsa-miR-128-2-5p 0 1 0
chr6:43056178|43058090 hsa-miR-6503-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr6:43056178|43058090
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MTWSPQAGNAESQSFDNVACGPRQYHAPGFGLCGLGPQT
Nucleotide Sequence CTGACTTGGTCTCCTCAGGCCGGAAACGCAGAAAGTCAATCATTCGATAACGTTGCTTGTGGCCCCCGCCAATACCATGCACCCGGATTCGGCCTGTGTGGTCTCGGCCCCCAGACT
CircID chr6:43056178|43058090
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MRSYGVIQTIPSSSHIPNLPTGIIADLDNLLLKGS
Nucleotide Sequence CTGAGAAGCTATGGAGTTATTCAGACCATTCCATCATCATCCCACATCCCAAACTTGCCTACAGGGATCATAGCGGACTTGGATAACCTTCTCCTCAAAGGGTCCTGA
CircID chr6:43056178|43058090
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MIDFLRFRPEETKSGPFEEKVIQVRYDPCRQVWDVG
Nucleotide Sequence ATGATTGACTTTCTGCGTTTCCGGCCTGAGGAGACCAAGTCAGGACCCTTTGAGGAGAAGGTTATCCAAGTCCGCTATGATCCCTGTAGGCAAGTTTGGGATGTGGGATGA
CircID chr6:43056178|43058090
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MTFCVSGLRRPSQDPLRRRLSKSAMIPVGKFGMWDDDGMV
Nucleotide Sequence TTGACTTTCTGCGTTTCCGGCCTGAGGAGACCAAGTCAGGACCCTTTGAGGAGAAGGTTATCCAAGTCCGCTATGATCCCTGTAGGCAAGTTTGGGATGTGGGATGATGATGGAATGGTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab