CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43130306|43130562
Strand +
CircType exon
Host Gene ENSG00000112655.14;
Algorism CIRI2;
Sequence CTCGCTACTACCACGTCCTGGGGTGCCAGCACCACCCTGGCAAAGCTTTCATCTGGAGAGGGAAAGATGGGGGAGCATGCAGCCTGGGTGGTGAGGCCCTCCTGTGCTCACCTCATCCCTTCCGCCCCCACCCCAGGCTCACCAGCAATGCTCAAGGTGAAGTTCTGGCTGCTGCAAGCCTGGCCAAAAGCACTGTGGGCGCAGCAGGAATACAGCCCACTATGCTCAGGACCAGCTGGCCGGAGCGTCAGGTTCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43130306|43130562 hsa-miR-107 0 0 1
chr6:43130306|43130562 hsa-miR-197-5p 0 0 1
chr6:43130306|43130562 hsa-miR-197-3p 0 0 1
chr6:43130306|43130562 hsa-miR-370-5p 0 0 1
chr6:43130306|43130562 hsa-miR-370-3p 0 0 1
chr6:43130306|43130562 hsa-miR-412-5p 0 0 1
chr6:43130306|43130562 hsa-miR-412-3p 0 0 1
chr6:43130306|43130562 hsa-miR-520f-5p 0 0 1
chr6:43130306|43130562 hsa-miR-520f-3p 0 0 1
chr6:43130306|43130562 hsa-miR-588 0 0 1
chr6:43130306|43130562 hsa-miR-608 0 1 1
chr6:43130306|43130562 hsa-miR-630 0 0 1
chr6:43130306|43130562 hsa-miR-661 0 0 1
chr6:43130306|43130562 hsa-miR-1301-5p 0 0 1
chr6:43130306|43130562 hsa-miR-1301-3p 0 0 1
chr6:43130306|43130562 hsa-miR-766-5p 0 0 1
chr6:43130306|43130562 hsa-miR-766-3p 0 0 1
chr6:43130306|43130562 hsa-miR-1200 0 1 1
chr6:43130306|43130562 hsa-miR-1202 0 0 1
chr6:43130306|43130562 hsa-miR-1293 0 1 1
chr6:43130306|43130562 hsa-miR-1255a 0 0 1
chr6:43130306|43130562 hsa-miR-361-3p 0 0 1
chr6:43130306|43130562 hsa-miR-1207-3p 0 1 1
chr6:43130306|43130562 hsa-miR-342-5p 0 0 1
chr6:43130306|43130562 hsa-miR-220b 0 0 1
chr6:43130306|43130562 hsa-miR-128 0 0 1
chr6:43130306|43130562 hsa-miR-642 0 0 1
chr6:43130306|43130562 hsa-miR-103 0 0 1
chr6:43130306|43130562 hsa-miR-1255b 0 0 1
chr6:43130306|43130562 hsa-miR-138 0 0 1
chr6:43130306|43130562 hsa-miR-762 1 0 0
chr6:43130306|43130562 hsa-miR-1268a 1 1 0
chr6:43130306|43130562 hsa-miR-2861 1 1 0
chr6:43130306|43130562 hsa-miR-3196 0 1 0
chr6:43130306|43130562 hsa-miR-1268b 1 1 0
chr6:43130306|43130562 hsa-miR-4512 1 1 0
chr6:43130306|43130562 hsa-miR-4651 0 1 0
chr6:43130306|43130562 hsa-miR-4656 1 0 0
chr6:43130306|43130562 hsa-miR-4675 0 1 0
chr6:43130306|43130562 hsa-miR-4689 1 0 0
chr6:43130306|43130562 hsa-miR-4739 1 0 0
chr6:43130306|43130562 hsa-miR-6085 1 0 0
chr6:43130306|43130562 hsa-miR-6133 1 0 0
chr6:43130306|43130562 hsa-miR-7515 1 1 0
chr6:43130306|43130562 hsa-miR-4435 0 1 0
chr6:43130306|43130562 hsa-miR-6734-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6840-3p 1 1 0
chr6:43130306|43130562 hsa-miR-500b-3p 0 1 0
chr6:43130306|43130562 hsa-miR-6765-5p 0 1 0
chr6:43130306|43130562 hsa-miR-5187-5p 0 1 0
chr6:43130306|43130562 hsa-miR-6757-5p 1 1 0
chr6:43130306|43130562 hsa-miR-4722-5p 1 1 0
chr6:43130306|43130562 hsa-miR-4755-3p 0 1 0
chr6:43130306|43130562 hsa-miR-6881-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6782-5p 1 1 0
chr6:43130306|43130562 hsa-miR-5006-5p 0 1 0
chr6:43130306|43130562 hsa-miR-6786-5p 0 1 0
chr6:43130306|43130562 hsa-miR-6772-3p 1 0 0
chr6:43130306|43130562 hsa-miR-4640-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6771-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6749-5p 1 0 0
chr6:43130306|43130562 hsa-miR-642b-5p 0 1 0
chr6:43130306|43130562 hsa-miR-3202 1 1 0
chr6:43130306|43130562 hsa-miR-7854-3p 0 1 0
chr6:43130306|43130562 hsa-miR-149-3p 1 0 0
chr6:43130306|43130562 hsa-miR-3616-3p 1 0 0
chr6:43130306|43130562 hsa-miR-7152-3p 0 1 0
chr6:43130306|43130562 hsa-miR-4742-3p 0 1 0
chr6:43130306|43130562 hsa-miR-208a-5p 0 1 0
chr6:43130306|43130562 hsa-miR-6837-3p 0 1 0
chr6:43130306|43130562 hsa-miR-216a-3p 0 1 0
chr6:43130306|43130562 hsa-miR-3074-5p 0 1 0
chr6:43130306|43130562 hsa-miR-642a-5p 0 1 0
chr6:43130306|43130562 hsa-miR-517-5p 1 1 0
chr6:43130306|43130562 hsa-miR-1207-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6812-5p 1 1 0
chr6:43130306|43130562 hsa-miR-6752-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6756-5p 1 1 0
chr6:43130306|43130562 hsa-miR-6803-5p 1 1 0
chr6:43130306|43130562 hsa-miR-6813-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6819-5p 0 1 0
chr6:43130306|43130562 hsa-miR-7107-5p 1 0 0
chr6:43130306|43130562 hsa-miR-1249-5p 1 1 0
chr6:43130306|43130562 hsa-miR-6722-3p 1 0 0
chr6:43130306|43130562 hsa-miR-6797-5p 1 1 0
chr6:43130306|43130562 hsa-miR-1915-3p 1 0 0
chr6:43130306|43130562 hsa-miR-3620-5p 1 0 0
chr6:43130306|43130562 hsa-miR-4728-5p 1 1 0
chr6:43130306|43130562 hsa-miR-6836-5p 1 0 0
chr6:43130306|43130562 hsa-miR-10392-5p 0 1 0
chr6:43130306|43130562 hsa-miR-10396b-5p 1 0 0
chr6:43130306|43130562 hsa-miR-1237-5p 0 1 0
chr6:43130306|43130562 hsa-miR-328-5p 1 1 0
chr6:43130306|43130562 hsa-miR-4649-5p 1 0 0
chr6:43130306|43130562 hsa-miR-4685-5p 0 1 0
chr6:43130306|43130562 hsa-miR-4726-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6883-5p 1 0 0
chr6:43130306|43130562 hsa-miR-3187-5p 0 1 0
chr6:43130306|43130562 hsa-miR-6885-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6766-5p 0 1 0
chr6:43130306|43130562 hsa-miR-3184-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6724-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6791-5p 1 0 0
chr6:43130306|43130562 hsa-miR-6893-3p 0 1 0
chr6:43130306|43130562 hsa-miR-6511a-3p 0 1 0
chr6:43130306|43130562 hsa-miR-6511b-3p 0 1 0
chr6:43130306|43130562 hsa-miR-6891-3p 0 1 0
chr6:43130306|43130562 hsa-miR-6764-5p 1 0 0
chr6:43130306|43130562 hsa-miR-3681-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:43130306|43130562
ORF Type ORF1
Protein Length 73
Nucleotide Length 219
Protein Sequence MAKLSSGEGKMGEHAAWVVRPSCAHLIPSAPTPGSPAMLKVKFWLLQAWPKALWAQQEYSPLCSGPAGRSVRF
Nucleotide Sequence CTGGCAAAGCTTTCATCTGGAGAGGGAAAGATGGGGGAGCATGCAGCCTGGGTGGTGAGGCCCTCCTGTGCTCACCTCATCCCTTCCGCCCCCACCCCAGGCTCACCAGCAATGCTCAAGGTGAAGTTCTGGCTGCTGCAAGCCTGGCCAAAAGCACTGTGGGCGCAGCAGGAATACAGCCCACTATGCTCAGGACCAGCTGGCCGGAGCGTCAGGTTC
CircID chr6:43130306|43130562
ORF Type ORF2
Protein Length 80
Nucleotide Length 240
Protein Sequence MGCQHHPGKAFIWRGKDGGACSLGGEALLCSPHPFRPHPRLTSNAQGEVLAAASLAKSTVGAAGIQPTMLRTSWPERQVP
Nucleotide Sequence CTGGGGTGCCAGCACCACCCTGGCAAAGCTTTCATCTGGAGAGGGAAAGATGGGGGAGCATGCAGCCTGGGTGGTGAGGCCCTCCTGTGCTCACCTCATCCCTTCCGCCCCCACCCCAGGCTCACCAGCAATGCTCAAGGTGAAGTTCTGGCTGCTGCAAGCCTGGCCAAAAGCACTGTGGGCGCAGCAGGAATACAGCCCACTATGCTCAGGACCAGCTGGCCGGAGCGTCAGGTTCCG
CircID chr6:43130306|43130562
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MTLRPAGPEHSGLYSCCAHSAFGQACSSQNFTLSIAGEPGVGAEGMR
Nucleotide Sequence CTGACGCTCCGGCCAGCTGGTCCTGAGCATAGTGGGCTGTATTCCTGCTGCGCCCACAGTGCTTTTGGCCAGGCTTGCAGCAGCCAGAACTTCACCTTGAGCATTGCTGGTGAGCCTGGGGTGGGGGCGGAAGGGATGAGGTGA
CircID chr6:43130306|43130562
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MVLSIVGCIPAAPTVLLARLAAARTSP
Nucleotide Sequence CTGGTCCTGAGCATAGTGGGCTGTATTCCTGCTGCGCCCACAGTGCTTTTGGCCAGGCTTGCAGCAGCCAGAACTTCACCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab