CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43143603|43145219
Strand +
CircType exon
Host Gene ENSG00000112655.14;
Algorism CIRI2;
Sequence CTCCCCAAACTCACTCTTCCCCAGCGTGGTGATGGGCTGCAGGCTAGACCGTGGGAAGTGCATCTTATCACTTGTGCTGTGGCGTTTGTTGGTGGCCGCGGGGCCGGAGCCCAAGCTGGTCAAGGCCACTTCTTCTTGGATCTCTGCTGAGGGCTGCCCGTTCTGCAAAGGCCCACCGTTGAGGCATTCCATCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43143603|43145219 hsa-miR-95-5p 0 0 1
chr6:43143603|43145219 hsa-miR-95-3p 0 0 1
chr6:43143603|43145219 hsa-miR-197-5p 0 0 1
chr6:43143603|43145219 hsa-miR-197-3p 0 0 1
chr6:43143603|43145219 hsa-miR-214-5p 0 0 1
chr6:43143603|43145219 hsa-miR-214-3p 0 0 1
chr6:43143603|43145219 hsa-miR-206 0 0 1
chr6:43143603|43145219 hsa-miR-495-5p 0 0 1
chr6:43143603|43145219 hsa-miR-495-3p 0 0 1
chr6:43143603|43145219 hsa-miR-596 0 1 1
chr6:43143603|43145219 hsa-miR-601 0 0 1
chr6:43143603|43145219 hsa-miR-613 0 0 1
chr6:43143603|43145219 hsa-miR-635 0 0 1
chr6:43143603|43145219 hsa-miR-662 0 0 1
chr6:43143603|43145219 hsa-miR-298 0 0 1
chr6:43143603|43145219 hsa-miR-541-5p 0 0 1
chr6:43143603|43145219 hsa-miR-541-3p 0 0 1
chr6:43143603|43145219 hsa-miR-922 0 1 1
chr6:43143603|43145219 hsa-miR-939-5p 0 0 1
chr6:43143603|43145219 hsa-miR-939-3p 0 0 1
chr6:43143603|43145219 hsa-miR-1184 0 0 1
chr6:43143603|43145219 hsa-miR-654-5p 0 1 1
chr6:43143603|43145219 hsa-miR-188-3p 0 0 1
chr6:43143603|43145219 hsa-miR-220b 0 0 1
chr6:43143603|43145219 hsa-miR-1260 0 0 1
chr6:43143603|43145219 hsa-miR-1 0 0 1
chr6:43143603|43145219 hsa-miR-3185 0 1 0
chr6:43143603|43145219 hsa-miR-4453 0 1 0
chr6:43143603|43145219 hsa-miR-4674 1 1 0
chr6:43143603|43145219 hsa-miR-4739 1 0 0
chr6:43143603|43145219 hsa-miR-5685 0 1 0
chr6:43143603|43145219 hsa-miR-8089 1 1 0
chr6:43143603|43145219 hsa-miR-4731-5p 0 1 0
chr6:43143603|43145219 hsa-miR-504-3p 1 0 0
chr6:43143603|43145219 hsa-miR-6786-5p 0 1 0
chr6:43143603|43145219 hsa-miR-6870-5p 1 0 0
chr6:43143603|43145219 hsa-miR-6763-5p 1 0 0
chr6:43143603|43145219 hsa-miR-4725-3p 0 1 0
chr6:43143603|43145219 hsa-miR-4700-5p 0 1 0
chr6:43143603|43145219 hsa-miR-4667-5p 0 1 0
chr6:43143603|43145219 hsa-miR-6529-5p 0 1 0
chr6:43143603|43145219 hsa-miR-10400-3p 0 1 0
chr6:43143603|43145219 hsa-miR-10392-3p 0 1 0
chr6:43143603|43145219 hsa-miR-33b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:43143603|43145219
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MQARPWEVHLITCAVAFVGGRGAGAQAGQGHFFLDLC
Nucleotide Sequence CTGCAGGCTAGACCGTGGGAAGTGCATCTTATCACTTGTGCTGTGGCGTTTGTTGGTGGCCGCGGGGCCGGAGCCCAAGCTGGTCAAGGCCACTTCTTCTTGGATCTCTGCTGA
CircID chr6:43143603|43145219
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MGCRLDRGKCILSLVLWRLLVAAGPEPKLVKATSSWISAEGCPFCKGPPLRHSI
Nucleotide Sequence ATGGGCTGCAGGCTAGACCGTGGGAAGTGCATCTTATCACTTGTGCTGTGGCGTTTGTTGGTGGCCGCGGGGCCGGAGCCCAAGCTGGTCAAGGCCACTTCTTCTTGGATCTCTGCTGAGGGCTGCCCGTTCTGCAAAGGCCCACCGTTGAGGCATTCCATC
CircID chr6:43143603|43145219
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MCCGVCWWPRGRSPSWSRPLLLGSLLRAARSAKAHR
Nucleotide Sequence TTGTGCTGTGGCGTTTGTTGGTGGCCGCGGGGCCGGAGCCCAAGCTGGTCAAGGCCACTTCTTCTTGGATCTCTGCTGAGGGCTGCCCGTTCTGCAAAGGCCCACCGTTGA
CircID chr6:43143603|43145219
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MPQRWAFAERAALSRDPRRSGLDQLGLRPRGHQQTPQHK
Nucleotide Sequence ATGCCTCAACGGTGGGCCTTTGCAGAACGGGCAGCCCTCAGCAGAGATCCAAGAAGAAGTGGCCTTGACCAGCTTGGGCTCCGGCCCCGCGGCCACCAACAAACGCCACAGCACAAGTGA
CircID chr6:43143603|43145219
ORF Type ORF5
Protein Length 64
Nucleotide Length 192
Protein Sequence MECLNGGPLQNGQPSAEIQEEVALTSLGSGPAATNKRHSTSDKMHFPRSSLQPITTLGKSEFGE
Nucleotide Sequence ATGGAATGCCTCAACGGTGGGCCTTTGCAGAACGGGCAGCCCTCAGCAGAGATCCAAGAAGAAGTGGCCTTGACCAGCTTGGGCTCCGGCCCCGCGGCCACCAACAAACGCCACAGCACAAGTGATAAGATGCACTTCCCACGGTCTAGCCTGCAGCCCATCACCACGCTGGGGAAGAGTGAGTTTGGGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab