CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43161001|43161199
Strand +
CircType exon
Host Gene ENSG00000112655.14;
Algorism CIRI2;
Sequence CCGGTCAAGGGGAGAAGTTGAAGGCCAGAAATTGGGGTTACCTGTGGCACCCACACTGTCCCTGATAGAGGAAGAGGTGGCAGGGAAAACTGCCCAGCTCAAAGCCCTAGTCGCCCAGTTTGGGTCCAAGTCAGCCTCCCAAAGGATGAGGGTGAGGAAGAGGAGGAAAGGCCAGGCCCTGCTCAGACCTCAGCAATGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43161001|43161199 hsa-miR-558 0 0 1
chr6:43161001|43161199 hsa-miR-612 1 1 1
chr6:43161001|43161199 hsa-miR-890 0 0 1
chr6:43161001|43161199 hsa-miR-1227-5p 0 0 1
chr6:43161001|43161199 hsa-miR-1227-3p 0 0 1
chr6:43161001|43161199 hsa-miR-1236-5p 0 0 1
chr6:43161001|43161199 hsa-miR-1236-3p 0 0 1
chr6:43161001|43161199 hsa-miR-1238-5p 0 0 1
chr6:43161001|43161199 hsa-miR-1238-3p 0 0 1
chr6:43161001|43161199 hsa-miR-485-5p 0 0 1
chr6:43161001|43161199 hsa-miR-501-5p 0 0 1
chr6:43161001|43161199 hsa-miR-628-5p 0 0 1
chr6:43161001|43161199 hsa-miR-1274a 0 0 1
chr6:43161001|43161199 hsa-miR-1285 0 0 1
chr6:43161001|43161199 hsa-miR-762 1 0 0
chr6:43161001|43161199 hsa-miR-940 1 0 0
chr6:43161001|43161199 hsa-miR-2861 1 1 0
chr6:43161001|43161199 hsa-miR-3176 0 1 0
chr6:43161001|43161199 hsa-miR-3929 0 1 0
chr6:43161001|43161199 hsa-miR-3689c 0 1 0
chr6:43161001|43161199 hsa-miR-4512 0 1 0
chr6:43161001|43161199 hsa-miR-4682 1 0 0
chr6:43161001|43161199 hsa-miR-4748 0 1 0
chr6:43161001|43161199 hsa-miR-5193 1 1 0
chr6:43161001|43161199 hsa-miR-5787 1 0 0
chr6:43161001|43161199 hsa-miR-6132 0 1 0
chr6:43161001|43161199 hsa-miR-6860 1 1 0
chr6:43161001|43161199 hsa-miR-548ba 0 1 0
chr6:43161001|43161199 hsa-miR-8055 0 1 0
chr6:43161001|43161199 hsa-miR-211-3p 1 1 0
chr6:43161001|43161199 hsa-miR-7155-5p 1 0 0
chr6:43161001|43161199 hsa-miR-6881-3p 0 1 0
chr6:43161001|43161199 hsa-miR-7160-5p 1 1 0
chr6:43161001|43161199 hsa-miR-6741-5p 0 1 0
chr6:43161001|43161199 hsa-miR-6759-5p 0 1 0
chr6:43161001|43161199 hsa-miR-7845-5p 0 1 0
chr6:43161001|43161199 hsa-miR-877-3p 0 1 0
chr6:43161001|43161199 hsa-miR-185-3p 1 1 0
chr6:43161001|43161199 hsa-miR-30b-3p 0 1 0
chr6:43161001|43161199 hsa-miR-548au-3p 0 1 0
chr6:43161001|43161199 hsa-miR-4715-3p 0 1 0
chr6:43161001|43161199 hsa-miR-6830-3p 0 1 0
chr6:43161001|43161199 hsa-miR-4446-5p 0 1 0
chr6:43161001|43161199 hsa-miR-7162-3p 0 1 0
chr6:43161001|43161199 hsa-miR-7112-5p 1 0 0
chr6:43161001|43161199 hsa-miR-887-5p 0 1 0
chr6:43161001|43161199 hsa-miR-4778-3p 0 1 0
chr6:43161001|43161199 hsa-miR-670-3p 0 1 0
chr6:43161001|43161199 hsa-miR-6752-3p 0 1 0
chr6:43161001|43161199 hsa-miR-1296-5p 1 0 0
chr6:43161001|43161199 hsa-miR-328-3p 1 0 0
chr6:43161001|43161199 hsa-miR-3124-3p 0 1 0
chr6:43161001|43161199 hsa-miR-676-5p 0 1 0
chr6:43161001|43161199 hsa-miR-1207-5p 1 0 0
chr6:43161001|43161199 hsa-miR-3689b-3p 0 1 0
chr6:43161001|43161199 hsa-miR-4763-3p 1 0 0
chr6:43161001|43161199 hsa-miR-6743-5p 1 0 0
chr6:43161001|43161199 hsa-miR-6722-3p 1 0 0
chr6:43161001|43161199 hsa-miR-6779-5p 0 1 0
chr6:43161001|43161199 hsa-miR-320a-5p 0 1 0
chr6:43161001|43161199 hsa-miR-3620-5p 1 0 0
chr6:43161001|43161199 hsa-miR-6836-5p 1 1 0
chr6:43161001|43161199 hsa-miR-1909-3p 1 0 0
chr6:43161001|43161199 hsa-miR-328-5p 1 0 0
chr6:43161001|43161199 hsa-miR-3689a-3p 0 1 0
chr6:43161001|43161199 hsa-miR-4685-5p 0 1 0
chr6:43161001|43161199 hsa-miR-6729-5p 1 0 0
chr6:43161001|43161199 hsa-miR-6848-5p 1 1 0
chr6:43161001|43161199 hsa-miR-6858-5p 1 0 0
chr6:43161001|43161199 hsa-miR-3187-5p 1 1 0
chr6:43161001|43161199 hsa-miR-939-5p 1 0 0
chr6:43161001|43161199 hsa-miR-10396a-3p 1 0 0
chr6:43161001|43161199 hsa-miR-10396b-3p 1 0 0
chr6:43161001|43161199 hsa-miR-6724-5p 1 0 0
chr6:43161001|43161199 hsa-miR-4722-3p 0 1 0
chr6:43161001|43161199 hsa-miR-6727-3p 0 1 0
chr6:43161001|43161199 hsa-miR-3059-5p 0 1 0
chr6:43161001|43161199 hsa-miR-6891-3p 0 1 0
chr6:43161001|43161199 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:43161001|43161199
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MGLPVAPTLSLIEEEVAGKTAQLKALVAQFGSKSASQRMRVRKRRKGQALLRPQQC
Nucleotide Sequence TTGGGGTTACCTGTGGCACCCACACTGTCCCTGATAGAGGAAGAGGTGGCAGGGAAAACTGCCCAGCTCAAAGCCCTAGTCGCCCAGTTTGGGTCCAAGTCAGCCTCCCAAAGGATGAGGGTGAGGAAGAGGAGGAAAGGCCAGGCCCTGCTCAGACCTCAGCAATGC
CircID chr6:43161001|43161199
ORF Type ORF2
Protein Length 62
Nucleotide Length 186
Protein Sequence MSRAWPFLLFLTLILWEADLDPNWATRALSWAVFPATSSSIRDSVGATGNPNFWPSTSPLDR
Nucleotide Sequence CTGAGCAGGGCCTGGCCTTTCCTCCTCTTCCTCACCCTCATCCTTTGGGAGGCTGACTTGGACCCAAACTGGGCGACTAGGGCTTTGAGCTGGGCAGTTTTCCCTGCCACCTCTTCCTCTATCAGGGACAGTGTGGGTGCCACAGGTAACCCCAATTTCTGGCCTTCAACTTCTCCCCTTGACCGG
CircID chr6:43161001|43161199
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MPPLPLSGTVWVPQVTPISGLQLLPLT
Nucleotide Sequence CTGCCACCTCTTCCTCTATCAGGGACAGTGTGGGTGCCACAGGTAACCCCAATTTCTGGCCTTCAACTTCTCCCCTTGACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab