CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43161022|43161261
Strand +
CircType exon
Host Gene ENSG00000112655.14;
Algorism CIRI2;
Sequence CCAGCTCATCCCAAGCCTAGCCCTCCCCAGGCAAAGTTGGCAGATGAGTGGCAGAGTTGGACCCGGTCAAGGGGAGAAGTTGAAGGCCAGAAATTGGGGTTACCTGTGGCACCCACACTGTCCCTGATAGAGGAAGAGGTGGCAGGGAAAACTGCCCAGCTCAAAGCCCTAGTCGCCCAGTTTGGGTCCAAGTCAGCCTCCCAAAGGATGAGGGTGAGGAAGAGGAGGAAAGGCCAGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43161022|43161261 hsa-miR-558 0 0 1
chr6:43161022|43161261 hsa-miR-612 1 1 1
chr6:43161022|43161261 hsa-miR-645 0 0 1
chr6:43161022|43161261 hsa-miR-661 0 0 1
chr6:43161022|43161261 hsa-miR-890 0 0 1
chr6:43161022|43161261 hsa-miR-939-5p 0 0 1
chr6:43161022|43161261 hsa-miR-939-3p 0 0 1
chr6:43161022|43161261 hsa-miR-1227-5p 0 0 1
chr6:43161022|43161261 hsa-miR-1227-3p 0 0 1
chr6:43161022|43161261 hsa-miR-1236-5p 0 0 1
chr6:43161022|43161261 hsa-miR-1236-3p 0 0 1
chr6:43161022|43161261 hsa-miR-1238-5p 0 0 1
chr6:43161022|43161261 hsa-miR-1238-3p 0 0 1
chr6:43161022|43161261 hsa-miR-1255a 0 0 1
chr6:43161022|43161261 hsa-miR-485-5p 0 0 1
chr6:43161022|43161261 hsa-miR-501-5p 0 0 1
chr6:43161022|43161261 hsa-miR-556-5p 0 0 1
chr6:43161022|43161261 hsa-miR-769-3p 0 0 1
chr6:43161022|43161261 hsa-miR-450b-3p 0 0 1
chr6:43161022|43161261 hsa-miR-1274a 0 0 1
chr6:43161022|43161261 hsa-miR-1255b 0 0 1
chr6:43161022|43161261 hsa-miR-1285 0 0 1
chr6:43161022|43161261 hsa-miR-1254 0 0 1
chr6:43161022|43161261 hsa-miR-762 1 0 0
chr6:43161022|43161261 hsa-miR-1202 1 0 0
chr6:43161022|43161261 hsa-miR-3176 1 1 0
chr6:43161022|43161261 hsa-miR-3929 0 1 0
chr6:43161022|43161261 hsa-miR-3689c 0 1 0
chr6:43161022|43161261 hsa-miR-1587 1 0 0
chr6:43161022|43161261 hsa-miR-4538 1 1 0
chr6:43161022|43161261 hsa-miR-4780 0 1 0
chr6:43161022|43161261 hsa-miR-5193 1 1 0
chr6:43161022|43161261 hsa-miR-6860 1 0 0
chr6:43161022|43161261 hsa-miR-548ba 0 1 0
chr6:43161022|43161261 hsa-miR-8055 0 1 0
chr6:43161022|43161261 hsa-miR-8089 0 1 0
chr6:43161022|43161261 hsa-miR-211-3p 1 1 0
chr6:43161022|43161261 hsa-miR-6749-3p 1 0 0
chr6:43161022|43161261 hsa-miR-3194-3p 1 1 0
chr6:43161022|43161261 hsa-miR-125b-1-3p 1 0 0
chr6:43161022|43161261 hsa-miR-6881-3p 0 1 0
chr6:43161022|43161261 hsa-miR-6875-3p 0 1 0
chr6:43161022|43161261 hsa-miR-6741-5p 0 1 0
chr6:43161022|43161261 hsa-miR-6759-5p 0 1 0
chr6:43161022|43161261 hsa-miR-7845-5p 0 1 0
chr6:43161022|43161261 hsa-miR-877-3p 1 1 0
chr6:43161022|43161261 hsa-miR-30b-3p 0 1 0
chr6:43161022|43161261 hsa-miR-1229-5p 1 0 0
chr6:43161022|43161261 hsa-miR-548au-3p 0 1 0
chr6:43161022|43161261 hsa-miR-4715-3p 0 1 0
chr6:43161022|43161261 hsa-miR-6771-5p 1 0 0
chr6:43161022|43161261 hsa-miR-3191-5p 1 0 0
chr6:43161022|43161261 hsa-miR-6830-3p 0 1 0
chr6:43161022|43161261 hsa-miR-4446-5p 0 1 0
chr6:43161022|43161261 hsa-miR-149-3p 1 0 0
chr6:43161022|43161261 hsa-miR-6824-5p 1 0 0
chr6:43161022|43161261 hsa-miR-3190-5p 1 0 0
chr6:43161022|43161261 hsa-miR-887-5p 0 1 0
chr6:43161022|43161261 hsa-miR-4778-3p 0 1 0
chr6:43161022|43161261 hsa-miR-670-3p 0 1 0
chr6:43161022|43161261 hsa-miR-6752-3p 0 1 0
chr6:43161022|43161261 hsa-miR-6773-3p 0 1 0
chr6:43161022|43161261 hsa-miR-3124-3p 0 1 0
chr6:43161022|43161261 hsa-miR-676-5p 0 1 0
chr6:43161022|43161261 hsa-miR-4727-5p 0 1 0
chr6:43161022|43161261 hsa-miR-6510-3p 1 0 0
chr6:43161022|43161261 hsa-miR-1233-5p 1 0 0
chr6:43161022|43161261 hsa-miR-1273h-5p 0 1 0
chr6:43161022|43161261 hsa-miR-3689b-3p 0 1 0
chr6:43161022|43161261 hsa-miR-6743-5p 1 0 0
chr6:43161022|43161261 hsa-miR-6756-5p 1 0 0
chr6:43161022|43161261 hsa-miR-6763-5p 0 1 0
chr6:43161022|43161261 hsa-miR-6779-5p 1 1 0
chr6:43161022|43161261 hsa-miR-320a-5p 0 1 0
chr6:43161022|43161261 hsa-miR-3620-5p 1 1 0
chr6:43161022|43161261 hsa-miR-6780b-5p 1 0 0
chr6:43161022|43161261 hsa-miR-328-5p 1 0 0
chr6:43161022|43161261 hsa-miR-3689a-3p 0 1 0
chr6:43161022|43161261 hsa-miR-4685-5p 1 1 0
chr6:43161022|43161261 hsa-miR-6729-5p 1 0 0
chr6:43161022|43161261 hsa-miR-6846-5p 1 1 0
chr6:43161022|43161261 hsa-miR-6848-5p 1 1 0
chr6:43161022|43161261 hsa-miR-6883-5p 0 1 0
chr6:43161022|43161261 hsa-miR-10396a-3p 1 0 0
chr6:43161022|43161261 hsa-miR-10396b-3p 1 0 0
chr6:43161022|43161261 hsa-miR-6785-5p 0 1 0
chr6:43161022|43161261 hsa-miR-6724-5p 1 0 0
chr6:43161022|43161261 hsa-miR-6791-5p 1 0 0
chr6:43161022|43161261 hsa-miR-4722-3p 0 1 0
chr6:43161022|43161261 hsa-miR-6727-3p 0 1 0
chr6:43161022|43161261 hsa-miR-3059-5p 0 1 0
chr6:43161022|43161261 hsa-miR-6891-3p 0 1 0
chr6:43161022|43161261 hsa-miR-10397-5p 0 1 0
chr6:43161022|43161261 hsa-miR-3922-3p 0 1 0
chr6:43161022|43161261 hsa-miR-6764-3p 1 0 0
chr6:43161022|43161261 hsa-miR-193a-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:43161022|43161261
ORF Type ORF1
Protein Length 68
Nucleotide Length 204
Protein Sequence MADEWQSWTRSRGEVEGQKLGLPVAPTLSLIEEEVAGKTAQLKALVAQFGSKSASQRMRVRKRRKGQA
Nucleotide Sequence TTGGCAGATGAGTGGCAGAGTTGGACCCGGTCAAGGGGAGAAGTTGAAGGCCAGAAATTGGGGTTACCTGTGGCACCCACACTGTCCCTGATAGAGGAAGAGGTGGCAGGGAAAACTGCCCAGCTCAAAGCCCTAGTCGCCCAGTTTGGGTCCAAGTCAGCCTCCCAAAGGATGAGGGTGAGGAAGAGGAGGAAAGGCCAGGCC
CircID chr6:43161022|43161261
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MSGRVGPGQGEKLKARNWGYLWHPHCP
Nucleotide Sequence ATGAGTGGCAGAGTTGGACCCGGTCAAGGGGAGAAGTTGAAGGCCAGAAATTGGGGTTACCTGTGGCACCCACACTGTCCCTGA
CircID chr6:43161022|43161261
ORF Type ORF3
Protein Length 61
Nucleotide Length 186
Protein Sequence MDPNWATRALSWAVFPATSSSIRDSVGATGNPNFWPSTSPLDRVQLCHSSANFAWGGLGLG
Nucleotide Sequence TTGGACCCAAACTGGGCGACTAGGGCTTTGAGCTGGGCAGTTTTCCCTGCCACCTCTTCCTCTATCAGGGACAGTGTGGGTGCCACAGGTAACCCCAATTTCTGGCCTTCAACTTCTCCCCTTGACCGGGTCCAACTCTGCCACTCATCTGCCAACTTTGCCTGGGGAGGGCTAGGCTTGGGATGA
CircID chr6:43161022|43161261
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MPPLPLSGTVWVPQVTPISGLQLLPLTGSNSATHLPTLPGEG
Nucleotide Sequence CTGCCACCTCTTCCTCTATCAGGGACAGTGTGGGTGCCACAGGTAACCCCAATTTCTGGCCTTCAACTTCTCCCCTTGACCGGGTCCAACTCTGCCACTCATCTGCCAACTTTGCCTGGGGAGGGCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab