CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43178806|43179148
Strand +
CircType exon
Host Gene ENSG00000112658.7;
Algorism CIRI2;
Sequence CTGTAGCTCGGTGAGGTTGCTGCTGCTCCCGGCCTGCTGCCCTATCACAGCCATCTGGAGGGAAGGGGATGTATGAGGAGGGGCAGGGACTGGCCAGCCAGTTCAGGCTCCCCTGGCTTCCCTGCCTGCCAACCACAGGCCTGAGCAGAAAAGCAGATGGGCTTCCAGGCTAGGGATTTTGGCTTTGATGAACTGGTAACAGGATCCCCTAAGGTCAAGACAAAGAAGTGGCTATCTGGGATGGGGTGAAAGATATCCCTACCTACCTGGTGGAGCTGAACTGCTGAAACAGGGATCTGCACTGTCCCAGATGATGCTGTCAGGAACACCTGGGGGACGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43178806|43179148 hsa-miR-15a-5p 0 0 1
chr6:43178806|43179148 hsa-miR-15a-3p 0 0 1
chr6:43178806|43179148 hsa-miR-192-5p 0 0 1
chr6:43178806|43179148 hsa-miR-192-3p 0 0 1
chr6:43178806|43179148 hsa-miR-148a-5p 0 0 1
chr6:43178806|43179148 hsa-miR-148a-3p 0 0 1
chr6:43178806|43179148 hsa-miR-214-5p 0 0 1
chr6:43178806|43179148 hsa-miR-214-3p 0 0 1
chr6:43178806|43179148 hsa-miR-215-5p 0 0 1
chr6:43178806|43179148 hsa-miR-215-3p 0 0 1
chr6:43178806|43179148 hsa-miR-15b-5p 0 0 1
chr6:43178806|43179148 hsa-miR-15b-3p 0 0 1
chr6:43178806|43179148 hsa-miR-152-5p 0 0 1
chr6:43178806|43179148 hsa-miR-152-3p 0 0 1
chr6:43178806|43179148 hsa-miR-195-5p 0 0 1
chr6:43178806|43179148 hsa-miR-195-3p 0 0 1
chr6:43178806|43179148 hsa-miR-148b-5p 0 0 1
chr6:43178806|43179148 hsa-miR-148b-3p 0 0 1
chr6:43178806|43179148 hsa-miR-196b-5p 0 0 1
chr6:43178806|43179148 hsa-miR-196b-3p 0 0 1
chr6:43178806|43179148 hsa-miR-424-5p 0 0 1
chr6:43178806|43179148 hsa-miR-424-3p 0 0 1
chr6:43178806|43179148 hsa-miR-431-5p 0 0 1
chr6:43178806|43179148 hsa-miR-431-3p 0 0 1
chr6:43178806|43179148 hsa-miR-511-5p 0 0 1
chr6:43178806|43179148 hsa-miR-511-3p 0 0 1
chr6:43178806|43179148 hsa-miR-497-5p 0 0 1
chr6:43178806|43179148 hsa-miR-497-3p 0 0 1
chr6:43178806|43179148 hsa-miR-596 0 0 1
chr6:43178806|43179148 hsa-miR-605-5p 0 0 1
chr6:43178806|43179148 hsa-miR-605-3p 0 0 1
chr6:43178806|43179148 hsa-miR-892b 0 0 1
chr6:43178806|43179148 hsa-miR-922 0 0 1
chr6:43178806|43179148 hsa-miR-939-5p 0 0 1
chr6:43178806|43179148 hsa-miR-939-3p 0 0 1
chr6:43178806|43179148 hsa-miR-940 0 0 1
chr6:43178806|43179148 hsa-miR-1200 0 0 1
chr6:43178806|43179148 hsa-miR-671-5p 1 1 1
chr6:43178806|43179148 hsa-miR-339-5p 0 0 1
chr6:43178806|43179148 hsa-miR-330-3p 0 0 1
chr6:43178806|43179148 hsa-miR-361-3p 1 1 1
chr6:43178806|43179148 hsa-miR-767-3p 0 1 1
chr6:43178806|43179148 hsa-miR-1207-5p 0 1 1
chr6:43178806|43179148 hsa-miR-324-3p 0 0 1
chr6:43178806|43179148 hsa-miR-485-3p 0 1 1
chr6:43178806|43179148 hsa-miR-1302 0 0 1
chr6:43178806|43179148 hsa-miR-1274a 0 0 1
chr6:43178806|43179148 hsa-miR-642 0 0 1
chr6:43178806|43179148 hsa-miR-1274b 0 0 1
chr6:43178806|43179148 hsa-miR-16 0 0 1
chr6:43178806|43179148 hsa-miR-544 0 0 1
chr6:43178806|43179148 hsa-miR-1254 0 0 1
chr6:43178806|43179148 hsa-miR-196a 0 0 1
chr6:43178806|43179148 hsa-miR-661 1 0 0
chr6:43178806|43179148 hsa-miR-665 1 0 0
chr6:43178806|43179148 hsa-miR-1913 0 1 0
chr6:43178806|43179148 hsa-miR-3137 1 0 0
chr6:43178806|43179148 hsa-miR-4270 0 1 0
chr6:43178806|43179148 hsa-miR-3937 1 0 0
chr6:43178806|43179148 hsa-miR-4526 0 1 0
chr6:43178806|43179148 hsa-miR-4530 0 1 0
chr6:43178806|43179148 hsa-miR-4539 0 1 0
chr6:43178806|43179148 hsa-miR-4675 1 1 0
chr6:43178806|43179148 hsa-miR-4686 0 1 0
chr6:43178806|43179148 hsa-miR-5193 0 1 0
chr6:43178806|43179148 hsa-miR-6081 0 1 0
chr6:43178806|43179148 hsa-miR-6125 1 0 0
chr6:43178806|43179148 hsa-miR-7150 0 1 0
chr6:43178806|43179148 hsa-miR-7974 1 1 0
chr6:43178806|43179148 hsa-miR-8063 0 1 0
chr6:43178806|43179148 hsa-miR-92a-2-5p 0 1 0
chr6:43178806|43179148 hsa-miR-4726-3p 0 1 0
chr6:43178806|43179148 hsa-miR-4687-3p 1 0 0
chr6:43178806|43179148 hsa-miR-6510-5p 0 1 0
chr6:43178806|43179148 hsa-miR-6842-3p 0 1 0
chr6:43178806|43179148 hsa-miR-8069 1 0 0
chr6:43178806|43179148 hsa-miR-3189-5p 1 0 0
chr6:43178806|43179148 hsa-miR-1915-5p 1 0 0
chr6:43178806|43179148 hsa-miR-6827-5p 1 1 0
chr6:43178806|43179148 hsa-miR-6735-3p 0 1 0
chr6:43178806|43179148 hsa-miR-615-5p 1 0 0
chr6:43178806|43179148 hsa-miR-4786-3p 1 1 0
chr6:43178806|43179148 hsa-miR-488-5p 0 1 0
chr6:43178806|43179148 hsa-miR-6749-5p 1 1 0
chr6:43178806|43179148 hsa-miR-4667-3p 0 1 0
chr6:43178806|43179148 hsa-miR-6824-5p 1 1 0
chr6:43178806|43179148 hsa-miR-3190-5p 0 1 0
chr6:43178806|43179148 hsa-miR-6811-3p 0 1 0
chr6:43178806|43179148 hsa-miR-2114-5p 0 1 0
chr6:43178806|43179148 hsa-miR-6887-3p 0 1 0
chr6:43178806|43179148 hsa-miR-6752-3p 0 1 0
chr6:43178806|43179148 hsa-miR-4749-3p 0 1 0
chr6:43178806|43179148 hsa-miR-6802-3p 0 1 0
chr6:43178806|43179148 hsa-miR-6748-3p 0 1 0
chr6:43178806|43179148 hsa-miR-6734-3p 0 1 0
chr6:43178806|43179148 hsa-miR-6729-3p 0 1 0
chr6:43178806|43179148 hsa-miR-6816-5p 0 1 0
chr6:43178806|43179148 hsa-miR-6808-5p 0 1 0
chr6:43178806|43179148 hsa-miR-6879-5p 0 1 0
chr6:43178806|43179148 hsa-miR-4755-5p 0 1 0
chr6:43178806|43179148 hsa-miR-6836-5p 1 0 0
chr6:43178806|43179148 hsa-miR-4632-5p 1 1 0
chr6:43178806|43179148 hsa-miR-4726-5p 0 1 0
chr6:43178806|43179148 hsa-miR-6735-5p 0 1 0
chr6:43178806|43179148 hsa-miR-6846-5p 1 0 0
chr6:43178806|43179148 hsa-miR-10398-3p 1 0 0
chr6:43178806|43179148 hsa-miR-6766-5p 1 0 0
chr6:43178806|43179148 hsa-miR-6756-3p 0 1 0
chr6:43178806|43179148 hsa-miR-3085-3p 0 1 0
chr6:43178806|43179148 hsa-miR-4691-5p 1 0 0
chr6:43178806|43179148 hsa-miR-3619-5p 0 1 0
chr6:43178806|43179148 hsa-miR-34c-5p 0 1 0
chr6:43178806|43179148 hsa-miR-6838-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:43178806|43179148
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MLPYHSHLEGRGCMRRGRDWPASSGSPGFPACQPQA
Nucleotide Sequence CTGCTGCCCTATCACAGCCATCTGGAGGGAAGGGGATGTATGAGGAGGGGCAGGGACTGGCCAGCCAGTTCAGGCTCCCCTGGCTTCCCTGCCTGCCAACCACAGGCCTGA
CircID chr6:43178806|43179148
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MGFQARDFGFDELVTGSPKVKTKKWLSGMG
Nucleotide Sequence ATGGGCTTCCAGGCTAGGGATTTTGGCTTTGATGAACTGGTAACAGGATCCCCTAAGGTCAAGACAAAGAAGTGGCTATCTGGGATGGGGTGA
CircID chr6:43178806|43179148
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MASLPANHRPEQKSRWASRLGILALMNW
Nucleotide Sequence CTGGCTTCCCTGCCTGCCAACCACAGGCCTGAGCAGAAAAGCAGATGGGCTTCCAGGCTAGGGATTTTGGCTTTGATGAACTGGTAA
CircID chr6:43178806|43179148
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MGWGERYPYLPGGAELLKQGSALSQMMLSGTPGGRH
Nucleotide Sequence CTGGGATGGGGTGAAAGATATCCCTACCTACCTGGTGGAGCTGAACTGCTGAAACAGGGATCTGCACTGTCCCAGATGATGCTGTCAGGAACACCTGGGGGACGCCAC
CircID chr6:43178806|43179148
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MYEEGQGLASQFRLPWLPCLPTTGLSRKADGLPG
Nucleotide Sequence ATGTATGAGGAGGGGCAGGGACTGGCCAGCCAGTTCAGGCTCCCCTGGCTTCCCTGCCTGCCAACCACAGGCCTGAGCAGAAAAGCAGATGGGCTTCCAGGCTAG
CircID chr6:43178806|43179148
ORF Type ORF6
Protein Length 49
Nucleotide Length 147
Protein Sequence MLRPVVGRQGSQGSLNWLASPCPSSYIPFPPDGCDRAAGREQQQPHRAT
Nucleotide Sequence CTGCTCAGGCCTGTGGTTGGCAGGCAGGGAAGCCAGGGGAGCCTGAACTGGCTGGCCAGTCCCTGCCCCTCCTCATACATCCCCTTCCCTCCAGATGGCTGTGATAGGGCAGCAGGCCGGGAGCAGCAGCAACCTCACCGAGCTACA
CircID chr6:43178806|43179148
ORF Type ORF7
Protein Length 92
Nucleotide Length 279
Protein Sequence MTASSGTVQIPVSAVQLHQVGRDIFHPIPDSHFFVLTLGDPVTSSSKPKSLAWKPICFSAQACGWQAGKPGEPELAGQSLPLLIHPLPSRWL
Nucleotide Sequence CTGACAGCATCATCTGGGACAGTGCAGATCCCTGTTTCAGCAGTTCAGCTCCACCAGGTAGGTAGGGATATCTTTCACCCCATCCCAGATAGCCACTTCTTTGTCTTGACCTTAGGGGATCCTGTTACCAGTTCATCAAAGCCAAAATCCCTAGCCTGGAAGCCCATCTGCTTTTCTGCTCAGGCCTGTGGTTGGCAGGCAGGGAAGCCAGGGGAGCCTGAACTGGCTGGCCAGTCCCTGCCCCTCCTCATACATCCCCTTCCCTCCAGATGGCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab