CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43285978|43286093
Strand +
CircType exon
Host Gene ENSG00000146216.10;
Algorism CIRI2;
Sequence CTGCCCACCCATCTCCAAGATCACTTGCCCACTGCCTCTCACCGAGTTGTCCAGGATGGAGCCAACTTTGGGGCAGGTCAGACCTGCCCCCTCACACCTGAGTAGACCGATGTTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43285978|43286093 hsa-miR-34a-5p 0 0 1
chr6:43285978|43286093 hsa-miR-34a-3p 0 0 1
chr6:43285978|43286093 hsa-miR-449a 0 0 1
chr6:43285978|43286093 hsa-miR-432-5p 0 0 1
chr6:43285978|43286093 hsa-miR-432-3p 0 0 1
chr6:43285978|43286093 hsa-miR-510-5p 0 0 1
chr6:43285978|43286093 hsa-miR-510-3p 0 0 1
chr6:43285978|43286093 hsa-miR-620 0 0 1
chr6:43285978|43286093 hsa-miR-631 0 0 1
chr6:43285978|43286093 hsa-miR-449b-5p 0 0 1
chr6:43285978|43286093 hsa-miR-449b-3p 0 0 1
chr6:43285978|43286093 hsa-miR-541-5p 0 0 1
chr6:43285978|43286093 hsa-miR-541-3p 0 0 1
chr6:43285978|43286093 hsa-miR-934 0 0 1
chr6:43285978|43286093 hsa-miR-1293 0 0 1
chr6:43285978|43286093 hsa-miR-1294 0 0 1
chr6:43285978|43286093 hsa-miR-1270 0 0 1
chr6:43285978|43286093 hsa-miR-1827 0 0 1
chr6:43285978|43286093 hsa-miR-512-5p 0 0 1
chr6:43285978|43286093 hsa-miR-125a-3p 0 0 1
chr6:43285978|43286093 hsa-miR-486-3p 0 0 1
chr6:43285978|43286093 hsa-miR-423-5p 1 0 1
chr6:43285978|43286093 hsa-miR-654-5p 0 0 1
chr6:43285978|43286093 hsa-miR-324-3p 0 0 1
chr6:43285978|43286093 hsa-miR-34c-5p 0 0 1
chr6:43285978|43286093 hsa-miR-549 0 0 1
chr6:43285978|43286093 hsa-miR-1245 0 0 1
chr6:43285978|43286093 hsa-miR-658 1 0 0
chr6:43285978|43286093 hsa-miR-378b 1 0 0
chr6:43285978|43286093 hsa-miR-3147 1 0 0
chr6:43285978|43286093 hsa-miR-3612 1 0 0
chr6:43285978|43286093 hsa-miR-4481 1 0 0
chr6:43285978|43286093 hsa-miR-1587 1 0 0
chr6:43285978|43286093 hsa-miR-4651 1 0 0
chr6:43285978|43286093 hsa-miR-4692 1 0 0
chr6:43285978|43286093 hsa-miR-4710 1 0 0
chr6:43285978|43286093 hsa-miR-4736 1 0 0
chr6:43285978|43286093 hsa-miR-5090 1 0 0
chr6:43285978|43286093 hsa-miR-5698 1 0 0
chr6:43285978|43286093 hsa-miR-6127 1 0 0
chr6:43285978|43286093 hsa-miR-6133 1 0 0
chr6:43285978|43286093 hsa-miR-6860 1 0 0
chr6:43285978|43286093 hsa-miR-8072 1 0 0
chr6:43285978|43286093 hsa-miR-6734-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6765-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6825-5p 1 0 0
chr6:43285978|43286093 hsa-miR-3192-5p 1 0 0
chr6:43285978|43286093 hsa-miR-4695-5p 1 0 0
chr6:43285978|43286093 hsa-miR-3151-5p 1 0 0
chr6:43285978|43286093 hsa-miR-3190-3p 1 0 0
chr6:43285978|43286093 hsa-miR-6881-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6786-5p 1 0 0
chr6:43285978|43286093 hsa-miR-885-3p 1 0 0
chr6:43285978|43286093 hsa-let-7b-5p 1 0 0
chr6:43285978|43286093 hsa-miR-149-3p 1 0 0
chr6:43285978|43286093 hsa-let-7c-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6801-5p 1 0 0
chr6:43285978|43286093 hsa-miR-1233-5p 1 0 0
chr6:43285978|43286093 hsa-miR-4763-3p 1 0 0
chr6:43285978|43286093 hsa-miR-6769b-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6778-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6893-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6743-5p 1 0 0
chr6:43285978|43286093 hsa-miR-1249-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6779-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6879-5p 1 0 0
chr6:43285978|43286093 hsa-miR-3620-5p 1 0 0
chr6:43285978|43286093 hsa-miR-5189-5p 1 0 0
chr6:43285978|43286093 hsa-miR-328-5p 1 0 0
chr6:43285978|43286093 hsa-miR-4649-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6729-5p 1 0 0
chr6:43285978|43286093 hsa-miR-3187-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6831-5p 1 0 0
chr6:43285978|43286093 hsa-miR-1285-3p 1 0 0
chr6:43285978|43286093 hsa-miR-6736-5p 1 0 0
chr6:43285978|43286093 hsa-miR-6849-5p 1 0 0
chr6:43285978|43286093 hsa-miR-10400-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:43285978|43286093
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence LPTHLQDHLPTASHRVVQDGANFGAGQTCPLTPE
Nucleotide Sequence CTGCCCACCCATCTCCAAGATCACTTGCCCACTGCCTCTCACCGAGTTGTCCAGGATGGAGCCAACTTTGGGGCAGGTCAGACCTGCCCCCTCACACCTGAGTAG
CircID chr6:43285978|43286093
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MPLTELSRMEPTLGQVRPAPSHLSRPMF
Nucleotide Sequence CTGCCTCTCACCGAGTTGTCCAGGATGGAGCCAACTTTGGGGCAGGTCAGACCTGCCCCCTCACACCTGAGTAGACCGATGTTC
CircID chr6:43285978|43286093
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MPQSWLHPGQLGERQWASDLGDGWA
Nucleotide Sequence CTGCCCCAAAGTTGGCTCCATCCTGGACAACTCGGTGAGAGGCAGTGGGCAAGTGATCTTGGAGATGGGTGGGCA
CircID chr6:43285978|43286093
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MTCPKVGSILDNSVRGSGQVILEMGGQ
Nucleotide Sequence CTGACCTGCCCCAAAGTTGGCTCCATCCTGGACAACTCGGTGAGAGGCAGTGGGCAAGTGATCTTGGAGATGGGTGGGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab