CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43444159|43444353
Strand +
CircType exon
Host Gene ENSG00000124574.13;
Algorism CIRI2;
Sequence CTTGCATGAGAAGCAGAGAGAAGAGGATGGCTAAGGCCAAGCCCTGGCCCACGGCCTTCCAGTAAGCTTGGTACACGTGCAAGGCCACGGCGCCCTCCTTCTTGCTTTCTTCCTGCAGCAGGCGACCAGATGTGCTCTGCTCCTCCTCCAGCCCCTCCTTTGTTTTCTCTGGGTTCTGTACTGACTGGGCTGTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43444159|43444353 hsa-miR-370-5p 0 0 1
chr6:43444159|43444353 hsa-miR-370-3p 0 0 1
chr6:43444159|43444353 hsa-miR-570-5p 0 0 1
chr6:43444159|43444353 hsa-miR-570-3p 0 0 1
chr6:43444159|43444353 hsa-miR-765 0 1 1
chr6:43444159|43444353 hsa-miR-942-5p 0 0 1
chr6:43444159|43444353 hsa-miR-942-3p 0 0 1
chr6:43444159|43444353 hsa-miR-1204 0 0 1
chr6:43444159|43444353 hsa-miR-1205 0 0 1
chr6:43444159|43444353 hsa-miR-1286 0 0 1
chr6:43444159|43444353 hsa-miR-1243 0 0 1
chr6:43444159|43444353 hsa-miR-423-5p 1 1 1
chr6:43444159|43444353 hsa-miR-637 1 0 0
chr6:43444159|43444353 hsa-miR-663a 1 0 0
chr6:43444159|43444353 hsa-miR-658 1 0 0
chr6:43444159|43444353 hsa-miR-762 1 1 0
chr6:43444159|43444353 hsa-miR-936 1 0 0
chr6:43444159|43444353 hsa-miR-1183 1 0 0
chr6:43444159|43444353 hsa-miR-1202 1 0 0
chr6:43444159|43444353 hsa-miR-711 1 1 0
chr6:43444159|43444353 hsa-miR-2861 1 0 0
chr6:43444159|43444353 hsa-miR-3141 1 0 0
chr6:43444159|43444353 hsa-miR-3154 1 0 0
chr6:43444159|43444353 hsa-miR-4270 1 0 0
chr6:43444159|43444353 hsa-miR-4271 1 0 0
chr6:43444159|43444353 hsa-miR-3652 1 1 0
chr6:43444159|43444353 hsa-miR-3919 0 1 0
chr6:43444159|43444353 hsa-miR-1268b 1 0 0
chr6:43444159|43444353 hsa-miR-4430 1 1 0
chr6:43444159|43444353 hsa-miR-3135b 1 1 0
chr6:43444159|43444353 hsa-miR-4489 1 0 0
chr6:43444159|43444353 hsa-miR-4492 1 0 0
chr6:43444159|43444353 hsa-miR-4498 1 1 0
chr6:43444159|43444353 hsa-miR-4505 1 0 0
chr6:43444159|43444353 hsa-miR-4508 1 0 0
chr6:43444159|43444353 hsa-miR-4525 1 0 0
chr6:43444159|43444353 hsa-miR-4533 1 1 0
chr6:43444159|43444353 hsa-miR-4534 1 0 0
chr6:43444159|43444353 hsa-miR-1587 1 0 0
chr6:43444159|43444353 hsa-miR-4651 1 0 0
chr6:43444159|43444353 hsa-miR-4656 1 0 0
chr6:43444159|43444353 hsa-miR-4688 1 0 0
chr6:43444159|43444353 hsa-miR-4734 1 0 0
chr6:43444159|43444353 hsa-miR-4739 1 1 0
chr6:43444159|43444353 hsa-miR-4741 1 0 0
chr6:43444159|43444353 hsa-miR-5194 1 0 0
chr6:43444159|43444353 hsa-miR-5685 0 1 0
chr6:43444159|43444353 hsa-miR-5698 1 0 0
chr6:43444159|43444353 hsa-miR-5787 1 0 0
chr6:43444159|43444353 hsa-miR-6069 1 0 0
chr6:43444159|43444353 hsa-miR-6081 1 1 0
chr6:43444159|43444353 hsa-miR-6085 1 1 0
chr6:43444159|43444353 hsa-miR-6086 1 0 0
chr6:43444159|43444353 hsa-miR-8072 1 0 0
chr6:43444159|43444353 hsa-miR-9899 0 1 0
chr6:43444159|43444353 hsa-miR-12118 1 1 0
chr6:43444159|43444353 hsa-miR-211-3p 1 0 0
chr6:43444159|43444353 hsa-miR-17-3p 1 0 0
chr6:43444159|43444353 hsa-miR-4433b-3p 1 0 0
chr6:43444159|43444353 hsa-miR-132-5p 0 1 0
chr6:43444159|43444353 hsa-miR-4731-5p 1 0 0
chr6:43444159|43444353 hsa-miR-7106-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6825-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6894-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6881-3p 0 1 0
chr6:43444159|43444353 hsa-miR-6799-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6510-5p 1 0 0
chr6:43444159|43444353 hsa-miR-766-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6089 1 1 0
chr6:43444159|43444353 hsa-miR-6880-5p 1 0 0
chr6:43444159|43444353 hsa-miR-7847-3p 1 0 0
chr6:43444159|43444353 hsa-miR-4695-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6746-5p 1 0 0
chr6:43444159|43444353 hsa-miR-4722-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6873-3p 0 1 0
chr6:43444159|43444353 hsa-miR-6817-3p 0 1 0
chr6:43444159|43444353 hsa-miR-877-3p 0 1 0
chr6:43444159|43444353 hsa-miR-185-3p 1 0 0
chr6:43444159|43444353 hsa-miR-6829-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6732-5p 1 0 0
chr6:43444159|43444353 hsa-miR-3190-3p 0 1 0
chr6:43444159|43444353 hsa-miR-6798-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6760-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6782-5p 1 0 0
chr6:43444159|43444353 hsa-miR-4640-5p 0 1 0
chr6:43444159|43444353 hsa-miR-296-3p 1 0 0
chr6:43444159|43444353 hsa-miR-6809-3p 0 1 0
chr6:43444159|43444353 hsa-miR-3648 1 0 0
chr6:43444159|43444353 hsa-miR-5196-3p 0 1 0
chr6:43444159|43444353 hsa-miR-4446-3p 1 0 0
chr6:43444159|43444353 hsa-miR-149-3p 1 0 0
chr6:43444159|43444353 hsa-miR-6830-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6824-5p 1 0 0
chr6:43444159|43444353 hsa-miR-3158-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6781-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6878-5p 1 1 0
chr6:43444159|43444353 hsa-miR-516b-5p 1 0 0
chr6:43444159|43444353 hsa-miR-5010-5p 1 0 0
chr6:43444159|43444353 hsa-miR-431-3p 0 1 0
chr6:43444159|43444353 hsa-miR-1207-5p 1 0 0
chr6:43444159|43444353 hsa-miR-1233-5p 1 0 0
chr6:43444159|43444353 hsa-miR-4763-3p 1 0 0
chr6:43444159|43444353 hsa-miR-6778-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6787-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6816-5p 1 0 0
chr6:43444159|43444353 hsa-miR-5001-5p 1 1 0
chr6:43444159|43444353 hsa-miR-6726-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6743-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6754-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6756-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6803-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6813-5p 1 1 0
chr6:43444159|43444353 hsa-miR-11181-3p 1 1 0
chr6:43444159|43444353 hsa-miR-1249-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6751-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6779-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6780a-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6797-5p 1 0 0
chr6:43444159|43444353 hsa-miR-7111-5p 1 0 0
chr6:43444159|43444353 hsa-miR-3620-5p 1 0 0
chr6:43444159|43444353 hsa-miR-4728-5p 1 0 0
chr6:43444159|43444353 hsa-miR-10396a-5p 1 0 0
chr6:43444159|43444353 hsa-miR-10396b-5p 1 0 0
chr6:43444159|43444353 hsa-miR-10526-3p 1 0 0
chr6:43444159|43444353 hsa-miR-1237-5p 1 0 0
chr6:43444159|43444353 hsa-miR-328-5p 1 1 0
chr6:43444159|43444353 hsa-miR-4649-5p 1 0 0
chr6:43444159|43444353 hsa-miR-4685-5p 0 1 0
chr6:43444159|43444353 hsa-miR-6738-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6795-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6846-5p 1 1 0
chr6:43444159|43444353 hsa-miR-6848-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6858-5p 1 1 0
chr6:43444159|43444353 hsa-miR-6883-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6887-5p 1 0 0
chr6:43444159|43444353 hsa-miR-4723-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6831-5p 0 1 0
chr6:43444159|43444353 hsa-miR-6885-5p 1 0 0
chr6:43444159|43444353 hsa-miR-939-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6511b-5p 1 0 0
chr6:43444159|43444353 hsa-miR-3940-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6731-5p 1 0 0
chr6:43444159|43444353 hsa-miR-6856-5p 1 0 0
chr6:43444159|43444353 hsa-miR-1914-3p 1 0 0
chr6:43444159|43444353 hsa-miR-4665-5p 1 0 0
chr6:43444159|43444353 hsa-miR-10398-3p 1 0 0
chr6:43444159|43444353 hsa-miR-3173-3p 1 1 0
chr6:43444159|43444353 hsa-miR-6876-5p 0 1 0
chr6:43444159|43444353 hsa-miR-6891-5p 1 1 0
chr6:43444159|43444353 hsa-miR-6785-5p 1 0 0
chr6:43444159|43444353 hsa-miR-3184-5p 1 1 0
chr6:43444159|43444353 hsa-miR-6529-5p 1 0 0
chr6:43444159|43444353 hsa-miR-10394-5p 1 0 0
chr6:43444159|43444353 hsa-miR-4768-5p 0 1 0
chr6:43444159|43444353 hsa-miR-6833-3p 0 1 0
chr6:43444159|43444353 hsa-miR-3922-3p 0 1 0
chr6:43444159|43444353 hsa-miR-1912-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:43444159|43444353
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MAHGLPVSLVHVQGHGALLLAFFLQQATRCALLLLQPLLCFLWVLY
Nucleotide Sequence CTGGCCCACGGCCTTCCAGTAAGCTTGGTACACGTGCAAGGCCACGGCGCCCTCCTTCTTGCTTTCTTCCTGCAGCAGGCGACCAGATGTGCTCTGCTCCTCCTCCAGCCCCTCCTTTGTTTTCTCTGGGTTCTGTACTGA
CircID chr6:43444159|43444353
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MLSSCSRRPDVLCSSSSPSFVFSGFCTDWAV
Nucleotide Sequence TTGCTTTCTTCCTGCAGCAGGCGACCAGATGTGCTCTGCTCCTCCTCCAGCCCCTCCTTTGTTTTCTCTGGGTTCTGTACTGACTGGGCTGTG
CircID chr6:43444159|43444353
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MVACCRKKARRRAPWPCTCTKLTGRPWARAWP
Nucleotide Sequence CTGGTCGCCTGCTGCAGGAAGAAAGCAAGAAGGAGGGCGCCGTGGCCTTGCACGTGTACCAAGCTTACTGGAAGGCCGTGGGCCAGGGCTTGGCCTTAG
CircID chr6:43444159|43444353
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MEEEQSTSGRLLQEESKKEGAVALHVYQAYWKAVGQGLALAILFSLLLMQ
Nucleotide Sequence CTGGAGGAGGAGCAGAGCACATCTGGTCGCCTGCTGCAGGAAGAAAGCAAGAAGGAGGGCGCCGTGGCCTTGCACGTGTACCAAGCTTACTGGAAGGCCGTGGGCCAGGGCTTGGCCTTAGCCATCCTCTTCTCTCTGCTTCTCATGCAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab