CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43506278|43506480
Strand -
CircType exon
Host Gene ENSG00000137221.13;
Algorism CIRI2;
Sequence CTGTTTGCTTCCCCCCCCAGTCCTCCGCATGAGCTGTTGCCCTCCAGGGGCCTGGCACAGCTGGCCTTGGGGACGAGGGAGAGGACTGATTCAGGGCCCCCTCAGCTGTCTCCTCCCTCCCTCTGGAAAGGAGGGTGGGGCTCAGGGGCCTCAAGCTGGGCTCTGTGTGAGGCCTGGCCCCCACTCCCAACCTTGGCTCTAGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43506278|43506480 hsa-miR-377-5p 0 0 1
chr6:43506278|43506480 hsa-miR-377-3p 0 0 1
chr6:43506278|43506480 hsa-miR-625-5p 0 0 1
chr6:43506278|43506480 hsa-miR-625-3p 0 0 1
chr6:43506278|43506480 hsa-miR-637 1 0 1
chr6:43506278|43506480 hsa-miR-658 0 0 1
chr6:43506278|43506480 hsa-miR-765 0 1 1
chr6:43506278|43506480 hsa-miR-1227-5p 0 0 1
chr6:43506278|43506480 hsa-miR-1227-3p 0 0 1
chr6:43506278|43506480 hsa-miR-1291 0 1 1
chr6:43506278|43506480 hsa-miR-1304-5p 0 0 1
chr6:43506278|43506480 hsa-miR-1304-3p 0 0 1
chr6:43506278|43506480 hsa-miR-1321 0 0 1
chr6:43506278|43506480 hsa-miR-1225-3p 0 0 1
chr6:43506278|43506480 hsa-miR-423-5p 0 0 1
chr6:43506278|43506480 hsa-miR-525-5p 0 1 1
chr6:43506278|43506480 hsa-miR-331-3p 0 1 1
chr6:43506278|43506480 hsa-miR-518d-5p 0 0 1
chr6:43506278|43506480 hsa-miR-519b-5p 0 0 1
chr6:43506278|43506480 hsa-miR-519c-5p 0 0 1
chr6:43506278|43506480 hsa-miR-520a-5p 0 1 1
chr6:43506278|43506480 hsa-miR-520c-5p 0 0 1
chr6:43506278|43506480 hsa-miR-125a-5p 0 1 1
chr6:43506278|43506480 hsa-miR-455-3p 0 0 1
chr6:43506278|43506480 hsa-miR-342-3p 0 1 1
chr6:43506278|43506480 hsa-miR-1233 0 0 1
chr6:43506278|43506480 hsa-miR-125b 0 0 1
chr6:43506278|43506480 hsa-miR-526a 0 0 1
chr6:43506278|43506480 hsa-miR-762 1 0 0
chr6:43506278|43506480 hsa-miR-3137 1 0 0
chr6:43506278|43506480 hsa-miR-4323 0 1 0
chr6:43506278|43506480 hsa-miR-4259 0 1 0
chr6:43506278|43506480 hsa-miR-4271 0 1 0
chr6:43506278|43506480 hsa-miR-3921 0 1 0
chr6:43506278|43506480 hsa-miR-4488 1 0 0
chr6:43506278|43506480 hsa-miR-4510 0 1 0
chr6:43506278|43506480 hsa-miR-4537 1 0 0
chr6:43506278|43506480 hsa-miR-4651 1 0 0
chr6:43506278|43506480 hsa-miR-4656 1 0 0
chr6:43506278|43506480 hsa-miR-4689 1 1 0
chr6:43506278|43506480 hsa-miR-4739 1 1 0
chr6:43506278|43506480 hsa-miR-4780 0 1 0
chr6:43506278|43506480 hsa-miR-4784 0 1 0
chr6:43506278|43506480 hsa-miR-5787 1 0 0
chr6:43506278|43506480 hsa-miR-6127 0 1 0
chr6:43506278|43506480 hsa-miR-6130 0 1 0
chr6:43506278|43506480 hsa-miR-6133 0 1 0
chr6:43506278|43506480 hsa-miR-4435 0 1 0
chr6:43506278|43506480 hsa-miR-4433b-3p 1 1 0
chr6:43506278|43506480 hsa-miR-92a-1-5p 0 1 0
chr6:43506278|43506480 hsa-miR-504-3p 1 0 0
chr6:43506278|43506480 hsa-miR-6825-5p 0 1 0
chr6:43506278|43506480 hsa-miR-1233-3p 0 1 0
chr6:43506278|43506480 hsa-miR-210-5p 0 1 0
chr6:43506278|43506480 hsa-miR-6881-3p 0 1 0
chr6:43506278|43506480 hsa-miR-7847-3p 1 0 0
chr6:43506278|43506480 hsa-miR-4695-5p 0 1 0
chr6:43506278|43506480 hsa-miR-4755-3p 0 1 0
chr6:43506278|43506480 hsa-miR-7160-5p 0 1 0
chr6:43506278|43506480 hsa-miR-6742-5p 1 0 0
chr6:43506278|43506480 hsa-miR-6716-5p 1 0 0
chr6:43506278|43506480 hsa-miR-6732-5p 1 0 0
chr6:43506278|43506480 hsa-miR-6782-5p 1 0 0
chr6:43506278|43506480 hsa-miR-3150b-3p 0 1 0
chr6:43506278|43506480 hsa-miR-5008-5p 0 1 0
chr6:43506278|43506480 hsa-miR-5006-5p 1 1 0
chr6:43506278|43506480 hsa-miR-345-3p 0 1 0
chr6:43506278|43506480 hsa-miR-6740-3p 0 1 0
chr6:43506278|43506480 hsa-miR-7109-5p 0 1 0
chr6:43506278|43506480 hsa-miR-1226-5p 1 0 0
chr6:43506278|43506480 hsa-miR-5187-3p 0 1 0
chr6:43506278|43506480 hsa-miR-7111-3p 0 1 0
chr6:43506278|43506480 hsa-miR-4787-5p 1 0 0
chr6:43506278|43506480 hsa-miR-149-3p 1 1 0
chr6:43506278|43506480 hsa-miR-3616-3p 0 1 0
chr6:43506278|43506480 hsa-miR-3162-5p 0 1 0
chr6:43506278|43506480 hsa-miR-6895-5p 1 0 0
chr6:43506278|43506480 hsa-miR-3922-5p 1 1 0
chr6:43506278|43506480 hsa-miR-4758-3p 0 1 0
chr6:43506278|43506480 hsa-miR-6867-3p 0 1 0
chr6:43506278|43506480 hsa-miR-1910-5p 0 1 0
chr6:43506278|43506480 hsa-miR-6814-5p 0 1 0
chr6:43506278|43506480 hsa-miR-6865-3p 0 1 0
chr6:43506278|43506480 hsa-miR-4649-3p 1 0 0
chr6:43506278|43506480 hsa-miR-1296-3p 0 1 0
chr6:43506278|43506480 hsa-miR-518c-5p 0 1 0
chr6:43506278|43506480 hsa-miR-4433a-5p 0 1 0
chr6:43506278|43506480 hsa-miR-6816-5p 1 0 0
chr6:43506278|43506480 hsa-miR-6752-5p 1 1 0
chr6:43506278|43506480 hsa-miR-6756-5p 1 0 0
chr6:43506278|43506480 hsa-miR-6803-5p 1 1 0
chr6:43506278|43506480 hsa-miR-6819-5p 1 0 0
chr6:43506278|43506480 hsa-miR-6851-5p 1 0 0
chr6:43506278|43506480 hsa-miR-11181-3p 0 1 0
chr6:43506278|43506480 hsa-miR-1249-5p 1 1 0
chr6:43506278|43506480 hsa-miR-6751-5p 1 0 0
chr6:43506278|43506480 hsa-miR-6780a-5p 1 1 0
chr6:43506278|43506480 hsa-miR-6797-5p 0 1 0
chr6:43506278|43506480 hsa-miR-7111-5p 1 1 0
chr6:43506278|43506480 hsa-miR-4728-5p 0 1 0
chr6:43506278|43506480 hsa-miR-1237-5p 1 0 0
chr6:43506278|43506480 hsa-miR-328-5p 1 0 0
chr6:43506278|43506480 hsa-miR-4632-5p 1 0 0
chr6:43506278|43506480 hsa-miR-4685-5p 1 1 0
chr6:43506278|43506480 hsa-miR-4726-5p 1 1 0
chr6:43506278|43506480 hsa-miR-4745-5p 1 1 0
chr6:43506278|43506480 hsa-miR-6794-5p 1 1 0
chr6:43506278|43506480 hsa-miR-6795-5p 0 1 0
chr6:43506278|43506480 hsa-miR-6848-5p 1 0 0
chr6:43506278|43506480 hsa-miR-6883-5p 0 1 0
chr6:43506278|43506480 hsa-miR-6887-5p 0 1 0
chr6:43506278|43506480 hsa-miR-6885-5p 0 1 0
chr6:43506278|43506480 hsa-miR-4758-5p 1 0 0
chr6:43506278|43506480 hsa-miR-1199-5p 0 1 0
chr6:43506278|43506480 hsa-miR-4716-3p 0 1 0
chr6:43506278|43506480 hsa-miR-6785-5p 0 1 0
chr6:43506278|43506480 hsa-miR-6762-5p 0 1 0
chr6:43506278|43506480 hsa-miR-4757-5p 0 1 0
chr6:43506278|43506480 hsa-miR-6775-3p 0 1 0
chr6:43506278|43506480 hsa-miR-4723-3p 0 1 0
chr6:43506278|43506480 hsa-miR-6751-3p 0 1 0
chr6:43506278|43506480 hsa-miR-6823-3p 0 1 0
chr6:43506278|43506480 hsa-miR-4690-3p 1 1 0
chr6:43506278|43506480 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:43506278|43506480
ORF Type ORF1
Protein Length 67
Nucleotide Length 201
Protein Sequence LFASPPSPPHELLPSRGLAQLALGTRERTDSGPPQLSPPSLWKGGWGSGASSWALCEAWPPLPTLAL
Nucleotide Sequence CTGTTTGCTTCCCCCCCCAGTCCTCCGCATGAGCTGTTGCCCTCCAGGGGCCTGGCACAGCTGGCCTTGGGGACGAGGGAGAGGACTGATTCAGGGCCCCCTCAGCTGTCTCCTCCCTCCCTCTGGAAAGGAGGGTGGGGCTCAGGGGCCTCAAGCTGGGCTCTGTGTGAGGCCTGGCCCCCACTCCCAACCTTGGCTCTA
CircID chr6:43506278|43506480
ORF Type ORF2
Protein Length 65
Nucleotide Length 198
Protein Sequence MLPPPVLRMSCCPPGAWHSWPWGRGRGLIQGPLSCLLPPSGKEGGAQGPQAGLCVRPGPHSQPWL
Nucleotide Sequence TTGCTTCCCCCCCCAGTCCTCCGCATGAGCTGTTGCCCTCCAGGGGCCTGGCACAGCTGGCCTTGGGGACGAGGGAGAGGACTGATTCAGGGCCCCCTCAGCTGTCTCCTCCCTCCCTCTGGAAAGGAGGGTGGGGCTCAGGGGCCTCAAGCTGGGCTCTGTGTGAGGCCTGGCCCCCACTCCCAACCTTGGCTCTAG
CircID chr6:43506278|43506480
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MGVGARPHTEPSLRPLSPTLLSRGREETAEGALNQSSPSSPRPAVPGPWRATAHAEDWGGKQT
Nucleotide Sequence TTGGGAGTGGGGGCCAGGCCTCACACAGAGCCCAGCTTGAGGCCCCTGAGCCCCACCCTCCTTTCCAGAGGGAGGGAGGAGACAGCTGAGGGGGCCCTGAATCAGTCCTCTCCCTCGTCCCCAAGGCCAGCTGTGCCAGGCCCCTGGAGGGCAACAGCTCATGCGGAGGACTGGGGGGGGAAGCAAACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab