CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43784616|43784804
Strand -
CircType exon
Host Gene ENSG00000112715.19;
Algorism CIRI2;
Sequence CAGGAAAGACTGATACAGAACGATCGATACAGAAACCACGCTGCCGCCACCACACCATCACCATCGACAGAACAGTCCTTAATCCAGAAACCTGAAATGAAGGAAGAGGAGACTCTGCGCAGAGCACTTTGGGTCCGGAGGGCGAGACTCCGGCGGAAGCATTCCCGGGCGGGTGACCCAGCACGGTCC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43784616|43784804 hsa-miR-17-5p 0 0 1
chr6:43784616|43784804 hsa-miR-17-3p 0 0 1
chr6:43784616|43784804 hsa-miR-20a-5p 0 0 1
chr6:43784616|43784804 hsa-miR-20a-3p 0 0 1
chr6:43784616|43784804 hsa-miR-93-5p 0 0 1
chr6:43784616|43784804 hsa-miR-93-3p 0 0 1
chr6:43784616|43784804 hsa-miR-106a-5p 0 0 1
chr6:43784616|43784804 hsa-miR-106a-3p 0 0 1
chr6:43784616|43784804 hsa-miR-205-5p 0 0 1
chr6:43784616|43784804 hsa-miR-205-3p 0 0 1
chr6:43784616|43784804 hsa-miR-106b-5p 0 0 1
chr6:43784616|43784804 hsa-miR-106b-3p 0 0 1
chr6:43784616|43784804 hsa-miR-302a-5p 0 0 1
chr6:43784616|43784804 hsa-miR-302a-3p 0 0 1
chr6:43784616|43784804 hsa-miR-302b-5p 0 0 1
chr6:43784616|43784804 hsa-miR-302b-3p 0 0 1
chr6:43784616|43784804 hsa-miR-302c-5p 0 0 1
chr6:43784616|43784804 hsa-miR-302c-3p 0 0 1
chr6:43784616|43784804 hsa-miR-302d-5p 0 0 1
chr6:43784616|43784804 hsa-miR-302d-3p 0 0 1
chr6:43784616|43784804 hsa-miR-372-5p 0 0 1
chr6:43784616|43784804 hsa-miR-372-3p 0 0 1
chr6:43784616|43784804 hsa-miR-373-5p 0 0 1
chr6:43784616|43784804 hsa-miR-373-3p 0 0 1
chr6:43784616|43784804 hsa-miR-20b-5p 0 0 1
chr6:43784616|43784804 hsa-miR-20b-3p 0 0 1
chr6:43784616|43784804 hsa-miR-520e-5p 0 0 1
chr6:43784616|43784804 hsa-miR-520e-3p 0 0 1
chr6:43784616|43784804 hsa-miR-520b-5p 0 0 1
chr6:43784616|43784804 hsa-miR-520b-3p 0 0 1
chr6:43784616|43784804 hsa-miR-519d-5p 0 0 1
chr6:43784616|43784804 hsa-miR-519d-3p 0 0 1
chr6:43784616|43784804 hsa-miR-520g-5p 0 0 1
chr6:43784616|43784804 hsa-miR-520g-3p 0 0 1
chr6:43784616|43784804 hsa-miR-520h 0 1 1
chr6:43784616|43784804 hsa-miR-579-5p 0 0 1
chr6:43784616|43784804 hsa-miR-579-3p 0 0 1
chr6:43784616|43784804 hsa-miR-622 0 0 1
chr6:43784616|43784804 hsa-miR-1236-5p 0 0 1
chr6:43784616|43784804 hsa-miR-1236-3p 0 0 1
chr6:43784616|43784804 hsa-miR-1299 0 0 1
chr6:43784616|43784804 hsa-miR-1249-5p 0 0 1
chr6:43784616|43784804 hsa-miR-1249-3p 0 0 1
chr6:43784616|43784804 hsa-miR-302e 0 0 1
chr6:43784616|43784804 hsa-miR-885-3p 1 1 1
chr6:43784616|43784804 hsa-miR-520d-3p 0 0 1
chr6:43784616|43784804 hsa-miR-520a-3p 0 0 1
chr6:43784616|43784804 hsa-miR-520c-3p 0 0 1
chr6:43784616|43784804 hsa-miR-516a-3p 0 0 1
chr6:43784616|43784804 hsa-miR-516b 0 0 1
chr6:43784616|43784804 hsa-miR-608 1 0 0
chr6:43784616|43784804 hsa-miR-3131 1 0 0
chr6:43784616|43784804 hsa-miR-3169 0 1 0
chr6:43784616|43784804 hsa-miR-3196 1 0 0
chr6:43784616|43784804 hsa-miR-4467 1 0 0
chr6:43784616|43784804 hsa-miR-4492 1 0 0
chr6:43784616|43784804 hsa-miR-4515 1 0 0
chr6:43784616|43784804 hsa-miR-3960 1 0 0
chr6:43784616|43784804 hsa-miR-4710 1 0 0
chr6:43784616|43784804 hsa-miR-4741 1 0 0
chr6:43784616|43784804 hsa-miR-8072 1 0 0
chr6:43784616|43784804 hsa-miR-11400 1 0 0
chr6:43784616|43784804 hsa-miR-1247-3p 0 1 0
chr6:43784616|43784804 hsa-miR-6879-3p 1 1 0
chr6:43784616|43784804 hsa-miR-6747-5p 1 0 0
chr6:43784616|43784804 hsa-miR-4687-3p 1 0 0
chr6:43784616|43784804 hsa-miR-6880-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6820-5p 1 0 0
chr6:43784616|43784804 hsa-miR-8069 1 0 0
chr6:43784616|43784804 hsa-miR-1224-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6821-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6786-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6835-5p 1 0 0
chr6:43784616|43784804 hsa-miR-4787-5p 1 0 0
chr6:43784616|43784804 hsa-miR-425-3p 1 0 0
chr6:43784616|43784804 hsa-miR-6770-3p 1 1 0
chr6:43784616|43784804 hsa-miR-18a-5p 0 1 0
chr6:43784616|43784804 hsa-miR-541-5p 0 1 0
chr6:43784616|43784804 hsa-miR-3184-3p 1 1 0
chr6:43784616|43784804 hsa-miR-10400-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6865-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6737-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6752-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6803-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6815-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6851-5p 1 0 0
chr6:43784616|43784804 hsa-miR-10401-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6751-5p 1 0 0
chr6:43784616|43784804 hsa-miR-365a-5p 1 0 0
chr6:43784616|43784804 hsa-miR-9851-5p 1 0 0
chr6:43784616|43784804 hsa-miR-34c-5p 1 0 0
chr6:43784616|43784804 hsa-miR-6839-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:43784616|43784804
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence MIQNDRYRNHAAATTPSPSTEQSLIQKPEMKEEETLRRALWVRRARLRRKHSRAGDPARS
Nucleotide Sequence CTGATACAGAACGATCGATACAGAAACCACGCTGCCGCCACCACACCATCACCATCGACAGAACAGTCCTTAATCCAGAAACCTGAAATGAAGGAAGAGGAGACTCTGCGCAGAGCACTTTGGGTCCGGAGGGCGAGACTCCGGCGGAAGCATTCCCGGGCGGGTGACCCAGCACGGTCC
CircID chr6:43784616|43784804
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MLPPESRPPDPKCSAQSLLFLHFRFLD
Nucleotide Sequence ATGCTTCCGCCGGAGTCTCGCCCTCCGGACCCAAAGTGCTCTGCGCAGAGTCTCCTCTTCCTTCATTTCAGGTTTCTGGATTAA
CircID chr6:43784616|43784804
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MRRVSSSFISGFWIKDCSVDGDGVVAAAWFLYRSFCISLS
Nucleotide Sequence CTGCGCAGAGTCTCCTCTTCCTTCATTTCAGGTTTCTGGATTAAGGACTGTTCTGTCGATGGTGATGGTGTGGTGGCGGCAGCGTGGTTTCTGTATCGATCGTTCTGTATCAGTCTTTCC
CircID chr6:43784616|43784804
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence MGHPPGNASAGVSPSGPKVLCAESPLPSFQVSGLRTVLSMVMVWWRQRGFCIDRSVSVFP
Nucleotide Sequence CTGGGTCACCCGCCCGGGAATGCTTCCGCCGGAGTCTCGCCCTCCGGACCCAAAGTGCTCTGCGCAGAGTCTCCTCTTCCTTCATTTCAGGTTTCTGGATTAAGGACTGTTCTGTCGATGGTGATGGTGTGGTGGCGGCAGCGTGGTTTCTGTATCGATCGTTCTGTATCAGTCTTTCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab