CircRNA Information

General Information
circRNA Basic Information
CircID chr6:43785312|43785436
Strand -
CircType exon
Host Gene ENSG00000112715.19;
Algorism CIRI2;
Sequence ACCGGCTCTGACCAGGAGTTTGGGGAGCTTCAGGACATTGCTGTGCTTTGGGGATTCCCTCCACATGCTGCACGCGCATCTCGCCCCCAGGGGCACTGCCTGGAAGATTCAGGAGCCTGGGCGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:43785312|43785436 hsa-miR-107 0 1 1
chr6:43785312|43785436 hsa-miR-34a-5p 0 0 1
chr6:43785312|43785436 hsa-miR-34a-3p 0 0 1
chr6:43785312|43785436 hsa-miR-449a 0 0 1
chr6:43785312|43785436 hsa-miR-484 0 0 1
chr6:43785312|43785436 hsa-miR-637 0 0 1
chr6:43785312|43785436 hsa-miR-449b-5p 0 0 1
chr6:43785312|43785436 hsa-miR-449b-3p 0 0 1
chr6:43785312|43785436 hsa-miR-127-5p 0 1 1
chr6:43785312|43785436 hsa-miR-330-3p 0 1 1
chr6:43785312|43785436 hsa-miR-331-3p 0 0 1
chr6:43785312|43785436 hsa-miR-34c-5p 0 0 1
chr6:43785312|43785436 hsa-miR-103 0 0 1
chr6:43785312|43785436 hsa-miR-1200 0 1 0
chr6:43785312|43785436 hsa-miR-1538 1 0 0
chr6:43785312|43785436 hsa-miR-4488 0 1 0
chr6:43785312|43785436 hsa-miR-4491 0 1 0
chr6:43785312|43785436 hsa-miR-3973 0 1 0
chr6:43785312|43785436 hsa-miR-4657 0 1 0
chr6:43785312|43785436 hsa-miR-4692 0 1 0
chr6:43785312|43785436 hsa-miR-4779 0 1 0
chr6:43785312|43785436 hsa-miR-141-5p 0 1 0
chr6:43785312|43785436 hsa-miR-4731-5p 0 1 0
chr6:43785312|43785436 hsa-miR-4726-3p 1 0 0
chr6:43785312|43785436 hsa-miR-6805-5p 1 0 0
chr6:43785312|43785436 hsa-miR-92b-5p 1 0 0
chr6:43785312|43785436 hsa-miR-4787-5p 1 0 0
chr6:43785312|43785436 hsa-miR-103a-3p 0 1 0
chr6:43785312|43785436 hsa-miR-7106-3p 1 1 0
chr6:43785312|43785436 hsa-miR-519d-5p 0 1 0
chr6:43785312|43785436 hsa-miR-4746-3p 1 1 0
chr6:43785312|43785436 hsa-miR-1233-5p 1 0 0
chr6:43785312|43785436 hsa-miR-6812-5p 1 0 0
chr6:43785312|43785436 hsa-miR-6803-5p 1 0 0
chr6:43785312|43785436 hsa-miR-6751-5p 1 1 0
chr6:43785312|43785436 hsa-miR-6797-5p 0 1 0
chr6:43785312|43785436 hsa-miR-186-3p 0 1 0
chr6:43785312|43785436 hsa-miR-1237-5p 1 0 0
chr6:43785312|43785436 hsa-miR-449c-5p 0 1 0
chr6:43785312|43785436 hsa-miR-4649-5p 0 1 0
chr6:43785312|43785436 hsa-miR-6729-5p 0 1 0
chr6:43785312|43785436 hsa-miR-6848-5p 1 0 0
chr6:43785312|43785436 hsa-miR-34b-5p 0 1 0
chr6:43785312|43785436 hsa-miR-6791-5p 0 1 0
chr6:43785312|43785436 hsa-miR-3928-5p 0 1 0
chr6:43785312|43785436 hsa-miR-2682-5p 0 1 0
chr6:43785312|43785436 hsa-miR-6806-3p 0 1 0
chr6:43785312|43785436 hsa-miR-1912-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:43785312|43785436
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MTRSLGSFRTLLCFGDSLHMLHAHLAPRGTAWKIQEPGR
Nucleotide Sequence CTGACCAGGAGTTTGGGGAGCTTCAGGACATTGCTGTGCTTTGGGGATTCCCTCCACATGCTGCACGCGCATCTCGCCCCCAGGGGCACTGCCTGGAAGATTCAGGAGCCTGGGCGG
CircID chr6:43785312|43785436
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MGIPSTCCTRISPPGALPGRFRSLGG
Nucleotide Sequence TTGGGGATTCCCTCCACATGCTGCACGCGCATCTCGCCCCCAGGGGCACTGCCTGGAAGATTCAGGAGCCTGGGCGGC
CircID chr6:43785312|43785436
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MNLPGSAPGGEMRVQHVEGIPKAQQCPEAPQTPGQSR
Nucleotide Sequence CTGAATCTTCCAGGCAGTGCCCCTGGGGGCGAGATGCGCGTGCAGCATGTGGAGGGAATCCCCAAAGCACAGCAATGTCCTGAAGCTCCCCAAACTCCTGGTCAGAGCCGG
CircID chr6:43785312|43785436
ORF Type ORF4
Protein Length 30
Nucleotide Length 90
Protein Sequence MGARCACSMWRESPKHSNVLKLPKLLVRAG
Nucleotide Sequence CTGGGGGCGAGATGCGCGTGCAGCATGTGGAGGGAATCCCCAAAGCACAGCAATGTCCTGAAGCTCCCCAAACTCCTGGTCAGAGCCGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab