CircRNA Information

General Information
circRNA Basic Information
CircID chr6:44134856|44135352
Strand +
CircType exon
Host Gene ENSG00000137216.17;
Algorism CIRI2;
Sequence TCGGTCCCTCTCCTGCCGCCGAAGCCTGTCTGCATCTGTCACCAAGGCCAGCCGCCCATAGTCCCAGGCCACCTTCCGGAGGATAGAGAATAAGAACAGCAGTGCCTGAGGGAAGAGGGGGCAGTTGGCAAGTGCAGAGGCTGTCTGTCCACCTGCTGGACTAGGGGGCAGAAGCAGAGGGTCCAAAATCTTGTCTTAGAAGGGGATGACCCTGGCTTGGGTGAATGGTCAAAGGCGAGGCTTGGGCTGGATGATGGGGACTCCTC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:44134856|44135352 hsa-miR-214-5p 0 0 1
chr6:44134856|44135352 hsa-miR-214-3p 0 0 1
chr6:44134856|44135352 hsa-miR-554 0 0 1
chr6:44134856|44135352 hsa-miR-591 0 0 1
chr6:44134856|44135352 hsa-miR-641 0 0 1
chr6:44134856|44135352 hsa-miR-661 0 1 1
chr6:44134856|44135352 hsa-miR-1236-5p 0 0 1
chr6:44134856|44135352 hsa-miR-1236-3p 0 0 1
chr6:44134856|44135352 hsa-miR-1324 0 1 1
chr6:44134856|44135352 hsa-miR-1289 0 0 1
chr6:44134856|44135352 hsa-miR-338-3p 0 0 1
chr6:44134856|44135352 hsa-miR-324-3p 1 0 1
chr6:44134856|44135352 hsa-miR-542-3p 0 0 1
chr6:44134856|44135352 hsa-miR-642 0 0 1
chr6:44134856|44135352 hsa-miR-612 1 0 0
chr6:44134856|44135352 hsa-miR-761 0 1 0
chr6:44134856|44135352 hsa-miR-1248 0 1 0
chr6:44134856|44135352 hsa-miR-1469 1 0 0
chr6:44134856|44135352 hsa-miR-1913 1 1 0
chr6:44134856|44135352 hsa-miR-3176 0 1 0
chr6:44134856|44135352 hsa-miR-3196 1 0 0
chr6:44134856|44135352 hsa-miR-4313 0 1 0
chr6:44134856|44135352 hsa-miR-4325 0 1 0
chr6:44134856|44135352 hsa-miR-378h 1 1 0
chr6:44134856|44135352 hsa-miR-4505 1 0 0
chr6:44134856|44135352 hsa-miR-4530 0 1 0
chr6:44134856|44135352 hsa-miR-3960 1 0 0
chr6:44134856|44135352 hsa-miR-5683 0 1 0
chr6:44134856|44135352 hsa-miR-5787 1 0 0
chr6:44134856|44135352 hsa-miR-9903 0 1 0
chr6:44134856|44135352 hsa-miR-4687-3p 1 0 0
chr6:44134856|44135352 hsa-miR-6720-5p 1 1 0
chr6:44134856|44135352 hsa-miR-766-3p 1 0 0
chr6:44134856|44135352 hsa-miR-4677-5p 0 1 0
chr6:44134856|44135352 hsa-miR-1915-5p 1 0 0
chr6:44134856|44135352 hsa-miR-7108-5p 1 0 0
chr6:44134856|44135352 hsa-miR-2467-3p 1 0 0
chr6:44134856|44135352 hsa-miR-4793-3p 0 1 0
chr6:44134856|44135352 hsa-miR-6728-3p 1 1 0
chr6:44134856|44135352 hsa-miR-6735-3p 1 0 0
chr6:44134856|44135352 hsa-miR-3691-3p 1 1 0
chr6:44134856|44135352 hsa-miR-615-3p 1 1 0
chr6:44134856|44135352 hsa-miR-7109-3p 0 1 0
chr6:44134856|44135352 hsa-miR-5001-3p 1 0 0
chr6:44134856|44135352 hsa-miR-1228-5p 1 0 0
chr6:44134856|44135352 hsa-miR-4640-3p 0 1 0
chr6:44134856|44135352 hsa-miR-1237-3p 1 1 0
chr6:44134856|44135352 hsa-miR-2276-5p 0 1 0
chr6:44134856|44135352 hsa-miR-5088-3p 1 1 0
chr6:44134856|44135352 hsa-miR-6738-3p 0 1 0
chr6:44134856|44135352 hsa-miR-328-3p 1 0 0
chr6:44134856|44135352 hsa-miR-4524a-3p 0 1 0
chr6:44134856|44135352 hsa-miR-3184-3p 0 1 0
chr6:44134856|44135352 hsa-miR-6846-3p 1 0 0
chr6:44134856|44135352 hsa-miR-6729-3p 1 0 0
chr6:44134856|44135352 hsa-miR-6885-3p 1 1 0
chr6:44134856|44135352 hsa-miR-6865-5p 1 1 0
chr6:44134856|44135352 hsa-miR-3127-3p 1 1 0
chr6:44134856|44135352 hsa-miR-6866-3p 1 0 0
chr6:44134856|44135352 hsa-miR-6848-5p 1 0 0
chr6:44134856|44135352 hsa-miR-6877-3p 1 1 0
chr6:44134856|44135352 hsa-miR-10401-3p 1 0 0
chr6:44134856|44135352 hsa-miR-6775-3p 1 0 0
chr6:44134856|44135352 hsa-miR-6819-3p 1 0 0
chr6:44134856|44135352 hsa-miR-3619-5p 0 1 0
chr6:44134856|44135352 hsa-miR-4690-3p 0 1 0
chr6:44134856|44135352 hsa-miR-6715b-5p 1 1 0
chr6:44134856|44135352 hsa-miR-3922-3p 0 1 0
chr6:44134856|44135352 hsa-miR-4790-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:44134856|44135352
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MPPKPVCICHQGQPPIVPGHLPEDRE
Nucleotide Sequence CTGCCGCCGAAGCCTGTCTGCATCTGTCACCAAGGCCAGCCGCCCATAGTCCCAGGCCACCTTCCGGAGGATAGAGAATAA
CircID chr6:44134856|44135352
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MREEGAVGKCRGCLSTCWTRGQKQRVQNLVLEGDDPGLGEWSKARLGLDDGDS
Nucleotide Sequence CTGAGGGAAGAGGGGGCAGTTGGCAAGTGCAGAGGCTGTCTGTCCACCTGCTGGACTAGGGGGCAGAAGCAGAGGGTCCAAAATCTTGTCTTAGAAGGGGATGACCCTGGCTTGGGTGAATGGTCAAAGGCGAGGCTTGGGCTGGATGATGGGGACTCC
CircID chr6:44134856|44135352
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MHLPTAPSSLRHCCSYSLSSGRWPGTMGGWPW
Nucleotide Sequence CTGCACTTGCCAACTGCCCCCTCTTCCCTCAGGCACTGCTGTTCTTATTCTCTATCCTCCGGAAGGTGGCCTGGGACTATGGGCGGCTGGCCTTGGTGA
CircID chr6:44134856|44135352
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MPPLPSGTAVLILYPPEGGLGLWAAGLGDRCRQASAAGEGP
Nucleotide Sequence CTGCCCCCTCTTCCCTCAGGCACTGCTGTTCTTATTCTCTATCCTCCGGAAGGTGGCCTGGGACTATGGGCGGCTGGCCTTGGTGACAGATGCAGACAGGCTTCGGCGGCAGGAGAGGGACCG
CircID chr6:44134856|44135352
ORF Type ORF5
Protein Length 62
Nucleotide Length 186
Protein Sequence MDPLLLPPSPAGGQTASALANCPLFPQALLFLFSILRKVAWDYGRLALVTDADRLRRQERDR
Nucleotide Sequence TTGGACCCTCTGCTTCTGCCCCCTAGTCCAGCAGGTGGACAGACAGCCTCTGCACTTGCCAACTGCCCCCTCTTCCCTCAGGCACTGCTGTTCTTATTCTCTATCCTCCGGAAGGTGGCCTGGGACTATGGGCGGCTGGCCTTGGTGACAGATGCAGACAGGCTTCGGCGGCAGGAGAGGGACCGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab