CircRNA Information

General Information
circRNA Basic Information
CircID chr6:44251854|44252092
Strand +
CircType exon
Host Gene ENSG00000096384.18;
Algorism CIRI2;
Sequence TCGTCAATGGGCTCGGTCATATATACCACCTCGAAGCCCCGTTTCCGCACTCGCTCCACAAAAGCTGAGTTGGCCACCTGCTCTTTGCTCTCACCTGTAGGGTAATTAAATGAACTCAGTGACTAAAATGCCTCATACTGCCAGTTCCCAGGAAGCCCTAATTGTGCTCCCCACTCCTCCAAAAAGGCTTCAATCAGAGTCAACGCACCAGTGATGTAATAGATGGACTTCTGTGTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:44251854|44252092 hsa-miR-34a-5p 0 0 1
chr6:44251854|44252092 hsa-miR-34a-3p 0 0 1
chr6:44251854|44252092 hsa-miR-449a 0 0 1
chr6:44251854|44252092 hsa-miR-552-5p 0 0 1
chr6:44251854|44252092 hsa-miR-552-3p 0 0 1
chr6:44251854|44252092 hsa-miR-579-5p 0 0 1
chr6:44251854|44252092 hsa-miR-579-3p 0 0 1
chr6:44251854|44252092 hsa-miR-449b-5p 0 0 1
chr6:44251854|44252092 hsa-miR-449b-3p 0 0 1
chr6:44251854|44252092 hsa-miR-1296-5p 0 0 1
chr6:44251854|44252092 hsa-miR-1296-3p 0 0 1
chr6:44251854|44252092 hsa-miR-765 0 1 1
chr6:44251854|44252092 hsa-miR-675-5p 0 0 1
chr6:44251854|44252092 hsa-miR-675-3p 0 0 1
chr6:44251854|44252092 hsa-miR-939-5p 0 0 1
chr6:44251854|44252092 hsa-miR-939-3p 0 0 1
chr6:44251854|44252092 hsa-miR-1276 0 0 1
chr6:44251854|44252092 hsa-miR-1292-5p 0 0 1
chr6:44251854|44252092 hsa-miR-1292-3p 0 0 1
chr6:44251854|44252092 hsa-miR-1827 0 0 1
chr6:44251854|44252092 hsa-miR-127-5p 0 0 1
chr6:44251854|44252092 hsa-miR-512-5p 0 0 1
chr6:44251854|44252092 hsa-miR-125a-3p 1 0 1
chr6:44251854|44252092 hsa-miR-491-5p 0 0 1
chr6:44251854|44252092 hsa-miR-615-3p 0 0 1
chr6:44251854|44252092 hsa-miR-34c-5p 0 0 1
chr6:44251854|44252092 hsa-miR-516a-3p 0 0 1
chr6:44251854|44252092 hsa-miR-768-5p 0 0 1
chr6:44251854|44252092 hsa-miR-499-3p 0 0 1
chr6:44251854|44252092 hsa-miR-1259 0 0 1
chr6:44251854|44252092 hsa-miR-608 1 1 0
chr6:44251854|44252092 hsa-miR-638 1 0 0
chr6:44251854|44252092 hsa-miR-760 1 0 0
chr6:44251854|44252092 hsa-miR-920 1 0 0
chr6:44251854|44252092 hsa-miR-2278 0 1 0
chr6:44251854|44252092 hsa-miR-2861 1 0 0
chr6:44251854|44252092 hsa-miR-548s 0 1 0
chr6:44251854|44252092 hsa-miR-3665 1 0 0
chr6:44251854|44252092 hsa-miR-3937 1 0 0
chr6:44251854|44252092 hsa-miR-4443 1 0 0
chr6:44251854|44252092 hsa-miR-4466 1 0 0
chr6:44251854|44252092 hsa-miR-4471 1 1 0
chr6:44251854|44252092 hsa-miR-4487 1 0 0
chr6:44251854|44252092 hsa-miR-4522 0 1 0
chr6:44251854|44252092 hsa-miR-4651 1 0 0
chr6:44251854|44252092 hsa-miR-4692 1 0 0
chr6:44251854|44252092 hsa-miR-4706 1 0 0
chr6:44251854|44252092 hsa-miR-4710 1 0 0
chr6:44251854|44252092 hsa-miR-5090 1 0 0
chr6:44251854|44252092 hsa-miR-5093 1 0 0
chr6:44251854|44252092 hsa-miR-5698 1 0 0
chr6:44251854|44252092 hsa-miR-6081 1 0 0
chr6:44251854|44252092 hsa-miR-6090 1 0 0
chr6:44251854|44252092 hsa-miR-6127 1 0 0
chr6:44251854|44252092 hsa-miR-6129 1 0 0
chr6:44251854|44252092 hsa-miR-6134 0 1 0
chr6:44251854|44252092 hsa-miR-8052 1 0 0
chr6:44251854|44252092 hsa-miR-8059 1 1 0
chr6:44251854|44252092 hsa-miR-8089 1 1 0
chr6:44251854|44252092 hsa-miR-12115 1 0 0
chr6:44251854|44252092 hsa-miR-138-5p 1 0 0
chr6:44251854|44252092 hsa-miR-4433b-3p 1 1 0
chr6:44251854|44252092 hsa-miR-504-3p 1 0 0
chr6:44251854|44252092 hsa-miR-4433a-3p 1 0 0
chr6:44251854|44252092 hsa-miR-7106-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6825-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6894-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6799-5p 1 0 0
chr6:44251854|44252092 hsa-miR-139-3p 1 0 0
chr6:44251854|44252092 hsa-miR-7114-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6515-5p 1 0 0
chr6:44251854|44252092 hsa-miR-7847-3p 1 0 0
chr6:44251854|44252092 hsa-miR-6741-5p 1 0 0
chr6:44251854|44252092 hsa-miR-3187-3p 1 0 0
chr6:44251854|44252092 hsa-miR-6721-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6716-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6796-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6827-5p 1 0 0
chr6:44251854|44252092 hsa-miR-23a-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6782-5p 1 1 0
chr6:44251854|44252092 hsa-miR-6874-5p 1 0 0
chr6:44251854|44252092 hsa-miR-5008-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6850-5p 0 1 0
chr6:44251854|44252092 hsa-miR-5088-5p 1 0 0
chr6:44251854|44252092 hsa-miR-1226-5p 1 0 0
chr6:44251854|44252092 hsa-miR-193b-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6784-5p 1 0 0
chr6:44251854|44252092 hsa-miR-885-3p 1 0 0
chr6:44251854|44252092 hsa-miR-4650-3p 1 0 0
chr6:44251854|44252092 hsa-miR-877-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6824-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6800-5p 1 1 0
chr6:44251854|44252092 hsa-miR-6886-5p 1 0 0
chr6:44251854|44252092 hsa-miR-3158-3p 1 1 0
chr6:44251854|44252092 hsa-miR-6868-5p 0 1 0
chr6:44251854|44252092 hsa-miR-6853-3p 0 1 0
chr6:44251854|44252092 hsa-miR-1306-3p 0 1 0
chr6:44251854|44252092 hsa-miR-1233-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6778-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6865-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6870-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6893-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6775-5p 1 0 0
chr6:44251854|44252092 hsa-miR-1343-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6726-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6737-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6752-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6756-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6803-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6819-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6851-5p 1 0 0
chr6:44251854|44252092 hsa-miR-7110-5p 1 0 0
chr6:44251854|44252092 hsa-miR-1249-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6722-3p 1 0 0
chr6:44251854|44252092 hsa-miR-6751-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6763-5p 1 0 0
chr6:44251854|44252092 hsa-miR-7111-5p 1 0 0
chr6:44251854|44252092 hsa-miR-4728-5p 1 0 0
chr6:44251854|44252092 hsa-miR-5196-5p 1 0 0
chr6:44251854|44252092 hsa-miR-10396a-5p 1 0 0
chr6:44251854|44252092 hsa-miR-10526-3p 1 0 0
chr6:44251854|44252092 hsa-miR-328-5p 1 0 0
chr6:44251854|44252092 hsa-miR-4632-5p 1 0 0
chr6:44251854|44252092 hsa-miR-4649-5p 1 0 0
chr6:44251854|44252092 hsa-miR-4745-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6729-5p 1 0 0
chr6:44251854|44252092 hsa-miR-6738-5p 1 1 0
chr6:44251854|44252092 hsa-miR-6889-5p 1 0 0
chr6:44251854|44252092 hsa-miR-4758-5p 1 0 0
chr6:44251854|44252092 hsa-miR-4665-5p 1 0 0
chr6:44251854|44252092 hsa-miR-4700-5p 1 0 0
chr6:44251854|44252092 hsa-miR-4646-5p 0 1 0
chr6:44251854|44252092 hsa-miR-4667-5p 0 1 0
chr6:44251854|44252092 hsa-miR-5591-5p 1 0 0
chr6:44251854|44252092 hsa-miR-9851-5p 1 0 0
chr6:44251854|44252092 hsa-miR-508-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:44251854|44252092
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MGSVIYTTSKPRFRTRSTKAELATCSLLSPVG
Nucleotide Sequence ATGGGCTCGGTCATATATACCACCTCGAAGCCCCGTTTCCGCACTCGCTCCACAAAAGCTGAGTTGGCCACCTGCTCTTTGCTCTCACCTGTAGGGTAA
CircID chr6:44251854|44252092
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MNSVTKMPHTASSQEALIVLPTPPKRLQSESTHQ
Nucleotide Sequence ATGAACTCAGTGACTAAAATGCCTCATACTGCCAGTTCCCAGGAAGCCCTAATTGTGCTCCCCACTCCTCCAAAAAGGCTTCAATCAGAGTCAACGCACCAGTGA
CircID chr6:44251854|44252092
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MCSPLLQKGFNQSQRTSDVIDGLLCL
Nucleotide Sequence TTGTGCTCCCCACTCCTCCAAAAAGGCTTCAATCAGAGTCAACGCACCAGTGATGTAATAGATGGACTTCTGTGTCTC
CircID chr6:44251854|44252092
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MTLIEAFLEEWGAQLGLPGNWQYEAF
Nucleotide Sequence TTGACTCTGATTGAAGCCTTTTTGGAGGAGTGGGGAGCACAATTAGGGCTTCCTGGGAACTGGCAGTATGAGGCATTTTAG
CircID chr6:44251854|44252092
ORF Type ORF5
Protein Length 39
Nucleotide Length 117
Protein Sequence MSSFNYPTGESKEQVANSAFVERVRKRGFEVVYMTEPID
Nucleotide Sequence CTGAGTTCATTTAATTACCCTACAGGTGAGAGCAAAGAGCAGGTGGCCAACTCAGCTTTTGTGGAGCGAGTGCGGAAACGGGGCTTCGAGGTGGTATATATGACCGAGCCCATTGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab