CircRNA Information

General Information
circRNA Basic Information
CircID chr6:46858549|46858747
Strand +
CircType exon
Host Gene ENSG00000069122.17;
Algorism CIRI2;
Sequence CTGCATAGTGAATATCGCTGCCTCCCTTCTGGTCGCCAACACCTGGTTCATTGTGGTCGCTGCCATCCAGGACAATCGCTACATACTCTGCAAGACAGCCTGTGTGGCTGCCACCTTCTTCATCCACTTCTTCTACCTCAGCGTCTTCTTCTGGATGCTGACACTGGGCCTCATGCTGTTCTATCGCCTGGTTTTCATT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:46858549|46858747 hsa-let-7b-5p 0 0 1
chr6:46858549|46858747 hsa-let-7b-3p 0 0 1
chr6:46858549|46858747 hsa-let-7c-5p 0 0 1
chr6:46858549|46858747 hsa-let-7c-3p 0 0 1
chr6:46858549|46858747 hsa-let-7d-5p 0 0 1
chr6:46858549|46858747 hsa-let-7d-3p 0 0 1
chr6:46858549|46858747 hsa-let-7e-5p 0 0 1
chr6:46858549|46858747 hsa-let-7e-3p 0 0 1
chr6:46858549|46858747 hsa-miR-98-5p 0 0 1
chr6:46858549|46858747 hsa-miR-98-3p 0 0 1
chr6:46858549|46858747 hsa-let-7g-5p 0 0 1
chr6:46858549|46858747 hsa-let-7g-3p 0 0 1
chr6:46858549|46858747 hsa-let-7i-5p 0 0 1
chr6:46858549|46858747 hsa-let-7i-3p 0 0 1
chr6:46858549|46858747 hsa-miR-431-5p 0 0 1
chr6:46858549|46858747 hsa-miR-431-3p 0 0 1
chr6:46858549|46858747 hsa-miR-202-5p 0 0 1
chr6:46858549|46858747 hsa-miR-202-3p 0 0 1
chr6:46858549|46858747 hsa-miR-570-5p 0 0 1
chr6:46858549|46858747 hsa-miR-570-3p 0 0 1
chr6:46858549|46858747 hsa-miR-626 -5 0 1
chr6:46858549|46858747 hsa-miR-650 -11 1 1
chr6:46858549|46858747 hsa-miR-1255a -2 0 1
chr6:46858549|46858747 hsa-miR-1321 -8 0 1
chr6:46858549|46858747 hsa-miR-1827 -6 0 1
chr6:46858549|46858747 hsa-miR-885-3p -12 1 1
chr6:46858549|46858747 hsa-miR-199a-5p 0 0 1
chr6:46858549|46858747 hsa-miR-199b-5p 0 0 1
chr6:46858549|46858747 hsa-miR-1255b 0 0 1
chr6:46858549|46858747 hsa-let-7a 0 0 1
chr6:46858549|46858747 hsa-let-7f 0 0 1
chr6:46858549|46858747 hsa-miR-1273 0 0 1
chr6:46858549|46858747 hsa-miR-768-3p 0 0 1
chr6:46858549|46858747 hsa-miR-219-5p 0 0 1
chr6:46858549|46858747 hsa-miR-198 -7 1 0
chr6:46858549|46858747 hsa-miR-3125 -15 1 0
chr6:46858549|46858747 hsa-miR-3154 -12 1 0
chr6:46858549|46858747 hsa-miR-3185 -19 1 0
chr6:46858549|46858747 hsa-miR-4467 -12 1 0
chr6:46858549|46858747 hsa-miR-128-3p -8 1 0
chr6:46858549|46858747 hsa-miR-3934-5p -19 1 0
chr6:46858549|46858747 hsa-miR-7160-5p -16 1 0
chr6:46858549|46858747 hsa-miR-24-3p -10 1 0
chr6:46858549|46858747 hsa-miR-30b-3p 0 1 0
chr6:46858549|46858747 hsa-miR-3691-5p -10 1 0
chr6:46858549|46858747 hsa-miR-7162-3p -12 1 0
chr6:46858549|46858747 hsa-miR-3678-3p -11 1 0
chr6:46858549|46858747 hsa-miR-6733-3p 1 1 0
chr6:46858549|46858747 hsa-miR-6865-5p -11 1 0
chr6:46858549|46858747 hsa-miR-6815-5p -9 1 0
chr6:46858549|46858747 hsa-miR-449c-5p -13 1 0
chr6:46858549|46858747 hsa-miR-6831-5p -19 1 0
chr6:46858549|46858747 hsa-miR-6849-5p -10 1 0
chr6:46858549|46858747 hsa-miR-4756-5p -14 1 0
chr6:46858549|46858747 hsa-miR-2682-5p -10 1 0
chr6:46858549|46858747 hsa-miR-4670-5p -12 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:46858549|46858747
ORF Type ORF1
Protein Length 66
Nucleotide Length 198
Protein Sequence LHSEYRCLPSGRQHLVHCGRCHPGQSLHTLQDSLCGCHLLHPLLLPQRLLLDADTGPHAVLSPGFH
Nucleotide Sequence CTGCATAGTGAATATCGCTGCCTCCCTTCTGGTCGCCAACACCTGGTTCATTGTGGTCGCTGCCATCCAGGACAATCGCTACATACTCTGCAAGACAGCCTGTGTGGCTGCCACCTTCTTCATCCACTTCTTCTACCTCAGCGTCTTCTTCTGGATGCTGACACTGGGCCTCATGCTGTTCTATCGCCTGGTTTTCAT
CircID chr6:46858549|46858747
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence MVANTWFIVVAAIQDNRYILCKTACVAATFFIHFFYLSVFFWMLTLGLMLFYRLVFI
Nucleotide Sequence CTGGTCGCCAACACCTGGTTCATTGTGGTCGCTGCCATCCAGGACAATCGCTACATACTCTGCAAGACAGCCTGTGTGGCTGCCACCTTCTTCATCCACTTCTTCTACCTCAGCGTCTTCTTCTGGATGCTGACACTGGGCCTCATGCTGTTCTATCGCCTGGTTTTCATT
CircID chr6:46858549|46858747
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MPPFWSPTPGSLWSLPSRTIATYSARQPVWLPPSSSTSSTSASSSGC
Nucleotide Sequence CTGCCTCCCTTCTGGTCGCCAACACCTGGTTCATTGTGGTCGCTGCCATCCAGGACAATCGCTACATACTCTGCAAGACAGCCTGTGTGGCTGCCACCTTCTTCATCCACTTCTTCTACCTCAGCGTCTTCTTCTGGATGCTGA
CircID chr6:46858549|46858747
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MSWMAATTMNQVLATRREAAIFTMQ
Nucleotide Sequence TTGTCCTGGATGGCAGCGACCACAATGAACCAGGTGTTGGCGACCAGAAGGGAGGCAGCGATATTCACTATGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab