CircRNA Information

General Information
circRNA Basic Information
CircID chr6:46883559|47029104
Strand -
CircType exon
Host Gene ENSG00000069122.17;
Algorism CIRI2;
Sequence CGCTGTTTCCAAGTCGGTCTTGTAGGACCTATAGAGGGCGGAGGAAGTGTTCATGAGGTCTTCTTGAAAGCCTACATTTAGTCTGACTCTCATGTTCAGGGTAACATCTTCCTGAAGCAGGCAAAAAGGTCCATTGGGAGGCAGTTCTTTAAGGCAACTGCAATGGTGCCCTGGGAGGAAGACGTCACGCTCTTGACAAATGAGATTGTGAAGACACCTTTCCCGAGGCCACCCATAACCTGTCTCGCAGGAGCACCAGATTTCATTTCCAGCAGGTCTGCAGACCCCAGGAAGCCACCGTGGCCGTCAGTGAAGGTGAAGAAAGAAATGAGCCACAGCACTCCAACTTTCATTTTCCCTGGACTGAACAGCAGCAGTCGGGTGCATAGTCTGTGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:46883559|47029104 hsa-miR-10a-5p 0 0 1
chr6:46883559|47029104 hsa-miR-10a-3p 0 0 1
chr6:46883559|47029104 hsa-miR-10b-5p 0 0 1
chr6:46883559|47029104 hsa-miR-10b-3p 0 0 1
chr6:46883559|47029104 hsa-miR-216a-5p 0 0 1
chr6:46883559|47029104 hsa-miR-216a-3p 0 0 1
chr6:46883559|47029104 hsa-miR-122-5p 0 0 1
chr6:46883559|47029104 hsa-miR-122-3p 0 0 1
chr6:46883559|47029104 hsa-miR-150-5p 0 0 1
chr6:46883559|47029104 hsa-miR-150-3p 0 0 1
chr6:46883559|47029104 hsa-miR-154-5p 0 0 1
chr6:46883559|47029104 hsa-miR-154-3p 0 0 1
chr6:46883559|47029104 hsa-miR-186-5p 0 0 1
chr6:46883559|47029104 hsa-miR-186-3p 0 0 1
chr6:46883559|47029104 hsa-miR-370-5p 0 0 1
chr6:46883559|47029104 hsa-miR-370-3p 0 0 1
chr6:46883559|47029104 hsa-miR-335-5p 0 0 1
chr6:46883559|47029104 hsa-miR-335-3p 0 0 1
chr6:46883559|47029104 hsa-miR-412-5p 0 0 1
chr6:46883559|47029104 hsa-miR-412-3p 0 0 1
chr6:46883559|47029104 hsa-miR-492 0 1 1
chr6:46883559|47029104 hsa-miR-498-5p 0 0 1
chr6:46883559|47029104 hsa-miR-498-3p 0 0 1
chr6:46883559|47029104 hsa-miR-579-5p 0 0 1
chr6:46883559|47029104 hsa-miR-579-3p 0 0 1
chr6:46883559|47029104 hsa-miR-890 0 0 1
chr6:46883559|47029104 hsa-miR-873-5p 0 0 1
chr6:46883559|47029104 hsa-miR-873-3p 0 0 1
chr6:46883559|47029104 hsa-miR-1205 0 0 1
chr6:46883559|47029104 hsa-miR-1287-5p 0 0 1
chr6:46883559|47029104 hsa-miR-1287-3p 0 0 1
chr6:46883559|47029104 hsa-miR-1293 1 1 1
chr6:46883559|47029104 hsa-miR-513b-5p 0 0 1
chr6:46883559|47029104 hsa-miR-513b-3p 0 0 1
chr6:46883559|47029104 hsa-miR-129-5p 0 0 1
chr6:46883559|47029104 hsa-miR-512-3p 1 0 1
chr6:46883559|47029104 hsa-miR-615-5p 0 0 1
chr6:46883559|47029104 hsa-miR-767-5p 0 1 1
chr6:46883559|47029104 hsa-miR-1184 0 0 1
chr6:46883559|47029104 hsa-miR-875-3p 0 0 1
chr6:46883559|47029104 hsa-miR-455-3p 0 1 1
chr6:46883559|47029104 hsa-miR-502-3p 0 0 1
chr6:46883559|47029104 hsa-miR-501-3p 0 1 1
chr6:46883559|47029104 hsa-miR-516a-3p 0 0 1
chr6:46883559|47029104 hsa-miR-24 0 0 1
chr6:46883559|47029104 hsa-miR-768-3p 0 0 1
chr6:46883559|47029104 hsa-miR-608 1 1 0
chr6:46883559|47029104 hsa-miR-637 1 0 0
chr6:46883559|47029104 hsa-miR-661 0 1 0
chr6:46883559|47029104 hsa-miR-4281 1 0 0
chr6:46883559|47029104 hsa-miR-3658 0 1 0
chr6:46883559|47029104 hsa-miR-3662 0 1 0
chr6:46883559|47029104 hsa-miR-3909 0 1 0
chr6:46883559|47029104 hsa-miR-4420 0 1 0
chr6:46883559|47029104 hsa-miR-4506 1 0 0
chr6:46883559|47029104 hsa-miR-4686 1 0 0
chr6:46883559|47029104 hsa-miR-5093 0 1 0
chr6:46883559|47029104 hsa-miR-5572 1 0 0
chr6:46883559|47029104 hsa-miR-9900 0 1 0
chr6:46883559|47029104 hsa-miR-504-3p 1 1 0
chr6:46883559|47029104 hsa-miR-7155-5p 1 1 0
chr6:46883559|47029104 hsa-miR-125b-1-3p 1 0 0
chr6:46883559|47029104 hsa-miR-6089 1 0 0
chr6:46883559|47029104 hsa-miR-6875-3p 0 1 0
chr6:46883559|47029104 hsa-miR-6741-5p 1 0 0
chr6:46883559|47029104 hsa-miR-8069 1 0 0
chr6:46883559|47029104 hsa-miR-6793-5p 1 0 0
chr6:46883559|47029104 hsa-miR-23a-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6782-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6514-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6882-3p 1 0 0
chr6:46883559|47029104 hsa-miR-345-3p 0 1 0
chr6:46883559|47029104 hsa-miR-1343-3p 0 1 0
chr6:46883559|47029104 hsa-miR-6852-5p 1 1 0
chr6:46883559|47029104 hsa-miR-6501-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6830-3p 0 1 0
chr6:46883559|47029104 hsa-miR-425-3p 0 1 0
chr6:46883559|47029104 hsa-miR-5584-5p 0 1 0
chr6:46883559|47029104 hsa-miR-6837-3p 0 1 0
chr6:46883559|47029104 hsa-miR-4529-3p 1 0 0
chr6:46883559|47029104 hsa-miR-7113-5p 0 1 0
chr6:46883559|47029104 hsa-miR-4524a-3p 0 1 0
chr6:46883559|47029104 hsa-miR-6759-3p 0 1 0
chr6:46883559|47029104 hsa-miR-506-5p 0 1 0
chr6:46883559|47029104 hsa-miR-4524b-3p 0 1 0
chr6:46883559|47029104 hsa-miR-10400-5p 1 0 0
chr6:46883559|47029104 hsa-miR-1233-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6769b-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6893-5p 1 1 0
chr6:46883559|47029104 hsa-miR-6737-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6803-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6819-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6842-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6754-3p 0 1 0
chr6:46883559|47029104 hsa-miR-1915-3p 0 1 0
chr6:46883559|47029104 hsa-miR-4701-3p 1 0 0
chr6:46883559|47029104 hsa-miR-4725-3p 1 0 0
chr6:46883559|47029104 hsa-miR-6848-5p 1 0 0
chr6:46883559|47029104 hsa-miR-939-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6791-5p 1 0 0
chr6:46883559|47029104 hsa-miR-9851-3p 0 1 0
chr6:46883559|47029104 hsa-miR-3059-5p 0 1 0
chr6:46883559|47029104 hsa-miR-10394-5p 1 0 0
chr6:46883559|47029104 hsa-miR-6843-3p 1 0 0
chr6:46883559|47029104 hsa-miR-146a-5p 0 1 0
chr6:46883559|47029104 hsa-miR-520a-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:46883559|47029104
ORF Type ORF1
Protein Length 94
Nucleotide Length 285
Protein Sequence MKQAKRSIGRQFFKATAMVPWEEDVTLLTNEIVKTPFPRPPITCLAGAPDFISSRSADPRKPPWPSVKVKKEMSHSTPTFIFPGLNSSSRVHSL
Nucleotide Sequence CTGAAGCAGGCAAAAAGGTCCATTGGGAGGCAGTTCTTTAAGGCAACTGCAATGGTGCCCTGGGAGGAAGACGTCACGCTCTTGACAAATGAGATTGTGAAGACACCTTTCCCGAGGCCACCCATAACCTGTCTCGCAGGAGCACCAGATTTCATTTCCAGCAGGTCTGCAGACCCCAGGAAGCCACCGTGGCCGTCAGTGAAGGTGAAGAAAGAAATGAGCCACAGCACTCCAACTTTCATTTTCCCTGGACTGAACAGCAGCAGTCGGGTGCATAGTCTGTGA
CircID chr6:46883559|47029104
ORF Type ORF2
Protein Length 49
Nucleotide Length 150
Protein Sequence MSRRSTRFHFQQVCRPQEATVAVSEGEERNEPQHSNFHFPWTEQQQSGA
Nucleotide Sequence CTGTCTCGCAGGAGCACCAGATTTCATTTCCAGCAGGTCTGCAGACCCCAGGAAGCCACCGTGGCCGTCAGTGAAGGTGAAGAAAGAAATGAGCCACAGCACTCCAACTTTCATTTTCCCTGGACTGAACAGCAGCAGTCGGGTGCATAG
CircID chr6:46883559|47029104
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MHPTAAVQSRENESWSAVAHFFLHLH
Nucleotide Sequence ATGCACCCGACTGCTGCTGTTCAGTCCAGGGAAAATGAAAGTTGGAGTGCTGTGGCTCATTTCTTTCTTCACCTTCACTGA
CircID chr6:46883559|47029104
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence MPPNGPFCLLQEDVTLNMRVRLNVGFQEDLMNTSSALYRSYKTDLETA
Nucleotide Sequence CTGCCTCCCAATGGACCTTTTTGCCTGCTTCAGGAAGATGTTACCCTGAACATGAGAGTCAGACTAAATGTAGGCTTTCAAGAAGACCTCATGAACACTTCCTCCGCCCTCTATAGGTCCTACAAGACCGACTTGGAAACAGCG
CircID chr6:46883559|47029104
ORF Type ORF5
Protein Length 93
Nucleotide Length 282
Protein Sequence MLLFSPGKMKVGVLWLISFFTFTDGHGGFLGSADLLEMKSGAPARQVMGGLGKGVFTISFVKSVTSSSQGTIAVALKNCLPMDLFACFRKMLP
Nucleotide Sequence CTGCTGCTGTTCAGTCCAGGGAAAATGAAAGTTGGAGTGCTGTGGCTCATTTCTTTCTTCACCTTCACTGACGGCCACGGTGGCTTCCTGGGGTCTGCAGACCTGCTGGAAATGAAATCTGGTGCTCCTGCGAGACAGGTTATGGGTGGCCTCGGGAAAGGTGTCTTCACAATCTCATTTGTCAAGAGCGTGACGTCTTCCTCCCAGGGCACCATTGCAGTTGCCTTAAAGAACTGCCTCCCAATGGACCTTTTTGCCTGCTTCAGGAAGATGTTACCCTGA
CircID chr6:46883559|47029104
ORF Type ORF6
Protein Length 27
Nucleotide Length 84
Protein Sequence MECCGSFLSSPSLTATVASWGLQTCWK
Nucleotide Sequence TTGGAGTGCTGTGGCTCATTTCTTTCTTCACCTTCACTGACGGCCACGGTGGCTTCCTGGGGTCTGCAGACCTGCTGGAAATGA
CircID chr6:46883559|47029104
ORF Type ORF7
Protein Length 31
Nucleotide Length 96
Protein Sequence MPASGRCYPEHESQTKCRLSRRPHEHFLRPL
Nucleotide Sequence TTGCCTGCTTCAGGAAGATGTTACCCTGAACATGAGAGTCAGACTAAATGTAGGCTTTCAAGAAGACCTCATGAACACTTCCTCCGCCCTCTATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab