CircRNA Information

General Information
circRNA Basic Information
CircID chr6:52403534|52403688
Strand -
CircType exon
Host Gene ENSG00000170915.8;
Algorism CIRI2;
Sequence CCACTCCCTGCCTCTGCTCCTCTTCATCCTGTCGTCAATCACTTACCTCACCTGCAGCCTTCTGGCCCACCTGCTGCAGTCCAAGTCAGAGCTCTCCCACTACACCTTCTACTTTGTGGACTATGTTGGCGTGAGCGTTTACCAATATGGCAGTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:52403534|52403688 hsa-let-7b-5p 0 0 1
chr6:52403534|52403688 hsa-let-7b-3p 0 0 1
chr6:52403534|52403688 hsa-let-7c-5p 0 0 1
chr6:52403534|52403688 hsa-let-7c-3p 0 0 1
chr6:52403534|52403688 hsa-let-7d-5p 0 0 1
chr6:52403534|52403688 hsa-let-7d-3p 0 0 1
chr6:52403534|52403688 hsa-let-7e-5p 0 0 1
chr6:52403534|52403688 hsa-let-7e-3p 0 0 1
chr6:52403534|52403688 hsa-miR-98-5p 0 0 1
chr6:52403534|52403688 hsa-miR-98-3p 0 0 1
chr6:52403534|52403688 hsa-miR-107 0 0 1
chr6:52403534|52403688 hsa-miR-214-5p 0 0 1
chr6:52403534|52403688 hsa-miR-214-3p 0 0 1
chr6:52403534|52403688 hsa-let-7g-5p 0 0 1
chr6:52403534|52403688 hsa-let-7g-3p 0 0 1
chr6:52403534|52403688 hsa-let-7i-5p 0 0 1
chr6:52403534|52403688 hsa-let-7i-3p 0 0 1
chr6:52403534|52403688 hsa-miR-345-5p 0 0 1
chr6:52403534|52403688 hsa-miR-345-3p 0 0 1
chr6:52403534|52403688 hsa-miR-202-5p 0 0 1
chr6:52403534|52403688 hsa-miR-202-3p 0 0 1
chr6:52403534|52403688 hsa-miR-657 0 0 1
chr6:52403534|52403688 hsa-miR-890 0 1 1
chr6:52403534|52403688 hsa-miR-541-5p 0 0 1
chr6:52403534|52403688 hsa-miR-541-3p 0 0 1
chr6:52403534|52403688 hsa-miR-940 0 0 1
chr6:52403534|52403688 hsa-miR-1205 0 0 1
chr6:52403534|52403688 hsa-miR-1294 0 0 1
chr6:52403534|52403688 hsa-miR-1279 0 0 1
chr6:52403534|52403688 hsa-miR-1288-5p 0 0 1
chr6:52403534|52403688 hsa-miR-1288-3p 0 0 1
chr6:52403534|52403688 hsa-miR-1827 0 0 1
chr6:52403534|52403688 hsa-miR-125a-3p 1 1 1
chr6:52403534|52403688 hsa-miR-1184 0 0 1
chr6:52403534|52403688 hsa-miR-654-5p 0 1 1
chr6:52403534|52403688 hsa-miR-1207-5p 0 1 1
chr6:52403534|52403688 hsa-miR-509-3-5p 0 1 1
chr6:52403534|52403688 hsa-miR-509-5p 0 1 1
chr6:52403534|52403688 hsa-miR-574-3p 0 1 1
chr6:52403534|52403688 hsa-miR-142-3p 0 0 1
chr6:52403534|52403688 hsa-miR-103 0 0 1
chr6:52403534|52403688 hsa-miR-1269 0 0 1
chr6:52403534|52403688 hsa-let-7a 0 0 1
chr6:52403534|52403688 hsa-let-7f 0 0 1
chr6:52403534|52403688 hsa-miR-608 1 0 0
chr6:52403534|52403688 hsa-miR-665 1 1 0
chr6:52403534|52403688 hsa-miR-1183 1 1 0
chr6:52403534|52403688 hsa-miR-3154 1 0 0
chr6:52403534|52403688 hsa-miR-3197 1 0 0
chr6:52403534|52403688 hsa-miR-4257 0 1 0
chr6:52403534|52403688 hsa-miR-3621 1 0 0
chr6:52403534|52403688 hsa-miR-3665 1 0 0
chr6:52403534|52403688 hsa-miR-3917 1 0 0
chr6:52403534|52403688 hsa-miR-3937 1 0 0
chr6:52403534|52403688 hsa-miR-4430 1 0 0
chr6:52403534|52403688 hsa-miR-4440 1 0 0
chr6:52403534|52403688 hsa-miR-4458 1 0 0
chr6:52403534|52403688 hsa-miR-4489 1 0 0
chr6:52403534|52403688 hsa-miR-2392 1 0 0
chr6:52403534|52403688 hsa-miR-4513 1 0 0
chr6:52403534|52403688 hsa-miR-4651 1 0 0
chr6:52403534|52403688 hsa-miR-4675 1 0 0
chr6:52403534|52403688 hsa-miR-4689 1 0 0
chr6:52403534|52403688 hsa-miR-4710 1 1 0
chr6:52403534|52403688 hsa-miR-4721 1 1 0
chr6:52403534|52403688 hsa-miR-4784 1 0 0
chr6:52403534|52403688 hsa-miR-6081 0 1 0
chr6:52403534|52403688 hsa-miR-6086 1 0 0
chr6:52403534|52403688 hsa-miR-6088 1 0 0
chr6:52403534|52403688 hsa-miR-6127 1 0 0
chr6:52403534|52403688 hsa-miR-6165 1 0 0
chr6:52403534|52403688 hsa-miR-8070 1 0 0
chr6:52403534|52403688 hsa-miR-8085 1 0 0
chr6:52403534|52403688 hsa-miR-12115 1 0 0
chr6:52403534|52403688 hsa-miR-12118 1 0 0
chr6:52403534|52403688 hsa-miR-6734-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6765-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6894-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6804-5p 1 0 0
chr6:52403534|52403688 hsa-miR-7847-3p 1 0 0
chr6:52403534|52403688 hsa-miR-4695-5p 0 1 0
chr6:52403534|52403688 hsa-miR-6744-5p 1 0 0
chr6:52403534|52403688 hsa-miR-4709-3p 0 1 0
chr6:52403534|52403688 hsa-miR-4722-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6890-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6772-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6796-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6798-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6881-5p 1 0 0
chr6:52403534|52403688 hsa-miR-2467-3p 0 1 0
chr6:52403534|52403688 hsa-miR-6782-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6810-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6786-5p 1 0 0
chr6:52403534|52403688 hsa-miR-4640-5p 1 1 0
chr6:52403534|52403688 hsa-miR-1228-5p 1 0 0
chr6:52403534|52403688 hsa-miR-4690-5p 1 0 0
chr6:52403534|52403688 hsa-miR-877-5p 1 0 0
chr6:52403534|52403688 hsa-miR-7854-3p 1 0 0
chr6:52403534|52403688 hsa-miR-4743-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6824-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6800-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6781-5p 1 0 0
chr6:52403534|52403688 hsa-miR-423-5p 1 1 0
chr6:52403534|52403688 hsa-miR-4727-3p 0 1 0
chr6:52403534|52403688 hsa-miR-6801-5p 1 1 0
chr6:52403534|52403688 hsa-miR-4529-3p 0 1 0
chr6:52403534|52403688 hsa-miR-483-5p 1 0 0
chr6:52403534|52403688 hsa-miR-1273h-5p 1 0 0
chr6:52403534|52403688 hsa-miR-4763-3p 0 1 0
chr6:52403534|52403688 hsa-miR-6769b-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6778-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6893-5p 1 0 0
chr6:52403534|52403688 hsa-miR-1343-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6743-5p 0 1 0
chr6:52403534|52403688 hsa-miR-6756-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6815-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6851-5p 1 0 0
chr6:52403534|52403688 hsa-miR-11181-3p 1 0 0
chr6:52403534|52403688 hsa-miR-6751-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6808-5p 0 1 0
chr6:52403534|52403688 hsa-miR-6879-5p 1 0 0
chr6:52403534|52403688 hsa-miR-3620-5p 1 0 0
chr6:52403534|52403688 hsa-miR-4726-5p 1 1 0
chr6:52403534|52403688 hsa-miR-6738-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6858-5p 1 1 0
chr6:52403534|52403688 hsa-miR-4436b-3p 1 0 0
chr6:52403534|52403688 hsa-miR-6831-5p 1 1 0
chr6:52403534|52403688 hsa-miR-939-5p 1 1 0
chr6:52403534|52403688 hsa-miR-30c-1-3p 0 1 0
chr6:52403534|52403688 hsa-miR-6731-5p 0 1 0
chr6:52403534|52403688 hsa-miR-6856-5p 1 0 0
chr6:52403534|52403688 hsa-miR-3173-3p 1 0 0
chr6:52403534|52403688 hsa-miR-6724-5p 1 0 0
chr6:52403534|52403688 hsa-miR-6859-5p 1 0 0
chr6:52403534|52403688 hsa-miR-10394-5p 0 1 0
chr6:52403534|52403688 hsa-miR-3619-5p 0 1 0
chr6:52403534|52403688 hsa-miR-301a-5p 0 1 0
chr6:52403534|52403688 hsa-miR-301b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr6:52403534|52403688
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MQPSGPPAAVQVRALPLHLLLCGLCWRERLPIWQ
Nucleotide Sequence CTGCAGCCTTCTGGCCCACCTGCTGCAGTCCAAGTCAGAGCTCTCCCACTACACCTTCTACTTTGTGGACTATGTTGGCGTGAGCGTTTACCAATATGGCAG
CircID chr6:52403534|52403688
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MPLLLFILSSITYLTCSLLAHLLQSKSELSHYTFYFVDYVGVSVYQYGS
Nucleotide Sequence CTGCCTCTGCTCCTCTTCATCCTGTCGTCAATCACTTACCTCACCTGCAGCCTTCTGGCCCACCTGCTGCAGTCCAAGTCAGAGCTCTCCCACTACACCTTCTACTTTGTGGACTATGTTGGCGTGAGCGTTTACCAATATGGCAGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab