CircRNA Information

General Information
circRNA Basic Information
CircID chr6:5660546|5660693
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTGACTCCACTGCTCACTGTTACTTTTTTTTTTTTTTTTTTTCTGAGACAGGGTCTCACTCTATTGTCTGGGCCAGAGTGCAGTGGTGTGATTATGCCTCACTGCAGTCCTTGACCTCCTGGGCTCAGGGGATCCCCCCACCTCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:5660546|5660693 hsa-miR-10a-5p 0 0 1
chr6:5660546|5660693 hsa-miR-10a-3p 0 0 1
chr6:5660546|5660693 hsa-miR-10b-5p 0 0 1
chr6:5660546|5660693 hsa-miR-10b-3p 0 0 1
chr6:5660546|5660693 hsa-miR-212-5p 0 0 1
chr6:5660546|5660693 hsa-miR-212-3p 0 0 1
chr6:5660546|5660693 hsa-miR-132-5p 0 0 1
chr6:5660546|5660693 hsa-miR-132-3p 0 0 1
chr6:5660546|5660693 hsa-miR-34b-5p 0 0 1
chr6:5660546|5660693 hsa-miR-34b-3p 0 0 1
chr6:5660546|5660693 hsa-miR-504-5p 0 0 1
chr6:5660546|5660693 hsa-miR-504-3p 0 0 1
chr6:5660546|5660693 hsa-miR-559 0 0 1
chr6:5660546|5660693 hsa-miR-802 0 0 1
chr6:5660546|5660693 hsa-miR-665 0 1 1
chr6:5660546|5660693 hsa-miR-1228-5p 0 0 1
chr6:5660546|5660693 hsa-miR-1228-3p 0 0 1
chr6:5660546|5660693 hsa-miR-548j-5p 0 0 1
chr6:5660546|5660693 hsa-miR-548j-3p 0 0 1
chr6:5660546|5660693 hsa-miR-548n 0 0 1
chr6:5660546|5660693 hsa-miR-1288-5p 0 0 1
chr6:5660546|5660693 hsa-miR-1288-3p 0 0 1
chr6:5660546|5660693 hsa-miR-1827 0 0 1
chr6:5660546|5660693 hsa-miR-1225-3p 0 0 1
chr6:5660546|5660693 hsa-miR-769-5p 0 0 1
chr6:5660546|5660693 hsa-miR-339-5p 0 0 1
chr6:5660546|5660693 hsa-miR-1289 0 0 1
chr6:5660546|5660693 hsa-miR-331-3p 0 0 1
chr6:5660546|5660693 hsa-miR-125a-5p 0 0 1
chr6:5660546|5660693 hsa-miR-509-3-5p 0 1 1
chr6:5660546|5660693 hsa-miR-509-5p 0 1 1
chr6:5660546|5660693 hsa-miR-548b-5p 0 0 1
chr6:5660546|5660693 hsa-miR-548d-5p 0 0 1
chr6:5660546|5660693 hsa-miR-548c-5p 0 0 1
chr6:5660546|5660693 hsa-miR-548a-5p 0 0 1
chr6:5660546|5660693 hsa-miR-548i 0 0 1
chr6:5660546|5660693 hsa-miR-1233 0 0 1
chr6:5660546|5660693 hsa-miR-125b 0 0 1
chr6:5660546|5660693 hsa-miR-220a 0 0 1
chr6:5660546|5660693 hsa-miR-194 0 0 1
chr6:5660546|5660693 hsa-miR-548h 0 0 1
chr6:5660546|5660693 hsa-miR-3169 0 1 0
chr6:5660546|5660693 hsa-miR-4421 0 1 0
chr6:5660546|5660693 hsa-miR-4519 1 0 0
chr6:5660546|5660693 hsa-miR-6134 0 1 0
chr6:5660546|5660693 hsa-miR-7703 1 1 0
chr6:5660546|5660693 hsa-miR-8052 1 1 0
chr6:5660546|5660693 hsa-miR-17-3p 0 1 0
chr6:5660546|5660693 hsa-miR-1247-3p 0 1 0
chr6:5660546|5660693 hsa-miR-6765-5p 1 0 0
chr6:5660546|5660693 hsa-miR-6854-5p 0 1 0
chr6:5660546|5660693 hsa-miR-7160-5p 0 1 0
chr6:5660546|5660693 hsa-miR-127-3p 0 1 0
chr6:5660546|5660693 hsa-miR-6782-5p 1 0 0
chr6:5660546|5660693 hsa-miR-615-5p 1 1 0
chr6:5660546|5660693 hsa-miR-7162-3p 0 1 0
chr6:5660546|5660693 hsa-miR-92a-3p 0 1 0
chr6:5660546|5660693 hsa-miR-514a-5p 0 1 0
chr6:5660546|5660693 hsa-miR-1273h-5p 0 1 0
chr6:5660546|5660693 hsa-miR-6752-5p 1 0 0
chr6:5660546|5660693 hsa-miR-6756-5p 1 0 0
chr6:5660546|5660693 hsa-miR-328-5p 1 0 0
chr6:5660546|5660693 hsa-miR-4685-5p 1 0 0
chr6:5660546|5660693 hsa-miR-6795-5p 1 0 0
chr6:5660546|5660693 hsa-miR-6887-5p 1 0 0
chr6:5660546|5660693 hsa-miR-1199-5p 0 1 0
chr6:5660546|5660693 hsa-miR-6773-5p 0 1 0
chr6:5660546|5660693 hsa-miR-1914-3p 1 0 0
chr6:5660546|5660693 hsa-miR-324-3p 0 1 0
chr6:5660546|5660693 hsa-miR-769-3p 0 1 0
chr6:5660546|5660693 hsa-miR-92b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:5660546|5660693
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence LTPLLTVTFFFFFFLRQGLTLLSGPECSGVIMPHCSP
Nucleotide Sequence TTGACTCCACTGCTCACTGTTACTTTTTTTTTTTTTTTTTTTCTGAGACAGGGTCTCACTCTATTGTCTGGGCCAGAGTGCAGTGGTGTGATTATGCCTCACTGCAGTCCTTGA
CircID chr6:5660546|5660693
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MHSGPDNRVRPCLRKKKKKKVTVSSGVK
Nucleotide Sequence CTGCACTCTGGCCCAGACAATAGAGTGAGACCCTGTCTCAGAAAAAAAAAAAAAAAAAAAGTAACAGTGAGCAGTGGAGTCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab