CircRNA Information

General Information
circRNA Basic Information
CircID chr6:71585351|71585534
Strand -
CircType exon
Host Gene ENSG00000218014.1;
Algorism CIRI2;
Sequence CTGAAGAAGAACCATGAGAAGGAAATCAGTGGGCTGAGGGGCCAAGTGGGAGGCCAGGTCAGTGGGGAGGTGGATTCGGCTCAGGGCACCTATCTCGCCAAGATCCTGAGTTACATGCGAAGCCAATACGAGGTCATGGCGGAGCAGAACTGGAAGGATGCTGAAGCCTGGTTCACCAGCCGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:71585351|71585534 hsa-miR-328-5p 0 0 1
chr6:71585351|71585534 hsa-miR-328-3p 0 0 1
chr6:71585351|71585534 hsa-miR-510-5p 0 0 1
chr6:71585351|71585534 hsa-miR-510-3p 0 0 1
chr6:71585351|71585534 hsa-miR-631 1 1 1
chr6:71585351|71585534 hsa-miR-874-5p 0 0 1
chr6:71585351|71585534 hsa-miR-874-3p 0 0 1
chr6:71585351|71585534 hsa-miR-1237-5p 0 0 1
chr6:71585351|71585534 hsa-miR-1237-3p 0 0 1
chr6:71585351|71585534 hsa-miR-1248 0 0 1
chr6:71585351|71585534 hsa-miR-145-5p 0 0 1
chr6:71585351|71585534 hsa-miR-532-3p 1 0 1
chr6:71585351|71585534 hsa-miR-146b-3p 0 0 1
chr6:71585351|71585534 hsa-miR-767-3p 0 0 1
chr6:71585351|71585534 hsa-miR-125a-5p 0 1 1
chr6:71585351|71585534 hsa-miR-125b 0 0 1
chr6:71585351|71585534 hsa-miR-138 0 0 1
chr6:71585351|71585534 hsa-miR-612 1 0 0
chr6:71585351|71585534 hsa-miR-1182 0 1 0
chr6:71585351|71585534 hsa-miR-4319 0 1 0
chr6:71585351|71585534 hsa-miR-4286 0 1 0
chr6:71585351|71585534 hsa-miR-4469 1 0 0
chr6:71585351|71585534 hsa-miR-138-5p 0 1 0
chr6:71585351|71585534 hsa-miR-6749-3p 1 1 0
chr6:71585351|71585534 hsa-miR-29a-5p 0 1 0
chr6:71585351|71585534 hsa-miR-6836-3p 1 0 0
chr6:71585351|71585534 hsa-miR-29b-2-5p 0 1 0
chr6:71585351|71585534 hsa-miR-6842-3p 1 0 0
chr6:71585351|71585534 hsa-miR-181a-2-3p 0 1 0
chr6:71585351|71585534 hsa-miR-6765-3p 1 0 0
chr6:71585351|71585534 hsa-miR-4436b-5p 1 1 0
chr6:71585351|71585534 hsa-miR-939-3p 1 0 0
chr6:71585351|71585534 hsa-miR-5187-3p 0 1 0
chr6:71585351|71585534 hsa-miR-3614-5p 0 1 0
chr6:71585351|71585534 hsa-miR-6878-3p 0 1 0
chr6:71585351|71585534 hsa-miR-1306-5p 0 1 0
chr6:71585351|71585534 hsa-miR-6825-3p 0 1 0
chr6:71585351|71585534 hsa-miR-1224-3p 1 0 0
chr6:71585351|71585534 hsa-miR-4749-3p 0 1 0
chr6:71585351|71585534 hsa-miR-3670 1 1 0
chr6:71585351|71585534 hsa-miR-1229-3p 1 0 0
chr6:71585351|71585534 hsa-miR-320a-5p 1 1 0
chr6:71585351|71585534 hsa-miR-3620-5p 1 0 0
chr6:71585351|71585534 hsa-miR-1199-5p 0 1 0
chr6:71585351|71585534 hsa-miR-6805-3p 1 0 0
chr6:71585351|71585534 hsa-miR-6829-3p 0 1 0
chr6:71585351|71585534 hsa-miR-6751-3p 1 1 0
chr6:71585351|71585534 hsa-miR-6848-3p 1 0 0
chr6:71585351|71585534 hsa-miR-4690-3p 1 1 0
chr6:71585351|71585534 hsa-miR-6874-3p 0 1 0
chr6:71585351|71585534 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr6:71585351|71585534
ORF Type ORF1
Protein Length 61
Nucleotide Length 183
Protein Sequence LKKNHEKEISGLRGQVGGQVSGEVDSAQGTYLAKILSYMRSQYEVMAEQNWKDAEAWFTSR
Nucleotide Sequence CTGAAGAAGAACCATGAGAAGGAAATCAGTGGGCTGAGGGGCCAAGTGGGAGGCCAGGTCAGTGGGGAGGTGGATTCGGCTCAGGGCACCTATCTCGCCAAGATCCTGAGTTACATGCGAAGCCAATACGAGGTCATGGCGGAGCAGAACTGGAAGGATGCTGAAGCCTGGTTCACCAGCCGG

CircID chr6:71585351|71585534
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MLRHDLVLASHVTQDLGEIGALSRIHLPTDLASHLAPQPTDFLLMVLLQ
Nucleotide Sequence CTGCTCCGCCATGACCTCGTATTGGCTTCGCATGTAACTCAGGATCTTGGCGAGATAGGTGCCCTGAGCCGAATCCACCTCCCCACTGACCTGGCCTCCCACTTGGCCCCTCAGCCCACTGATTTCCTTCTCATGGTTCTTCTTCAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites