CircRNA Information

General Information
circRNA Basic Information
CircID chr6:7247050|7247221
Strand +
CircType exon
Host Gene ENSG00000124782.18;
Algorism CIRI2;
Sequence CTGTGTGGGAGCGCATGTGCCGGGTCAGGTCCTGCAGCGACCAGAACCGCTTGTTGCACACGCTGCAGACCTTCTTCCTCTTGTCTGCCTTGCTGGCCACGCTTTTGGGGGAGTCTGTCTTTGGTTTCTTGTCATCGTCGCTCTTCTCTGAGGACCTTTTCTCGGCCGCGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:7247050|7247221 hsa-miR-19a-5p 0 0 1
chr6:7247050|7247221 hsa-miR-19a-3p 0 0 1
chr6:7247050|7247221 hsa-miR-492 0 1 1
chr6:7247050|7247221 hsa-miR-493-5p 0 0 1
chr6:7247050|7247221 hsa-miR-493-3p 0 0 1
chr6:7247050|7247221 hsa-miR-639 0 0 1
chr6:7247050|7247221 hsa-miR-1204 0 0 1
chr6:7247050|7247221 hsa-miR-1205 0 1 1
chr6:7247050|7247221 hsa-miR-1286 0 0 1
chr6:7247050|7247221 hsa-miR-1253 0 0 1
chr6:7247050|7247221 hsa-miR-532-3p 0 0 1
chr6:7247050|7247221 hsa-miR-941 0 1 1
chr6:7247050|7247221 hsa-miR-1184 0 0 1
chr6:7247050|7247221 hsa-miR-361-3p 0 0 1
chr6:7247050|7247221 hsa-miR-188-3p 0 0 1
chr6:7247050|7247221 hsa-miR-19b 0 0 1
chr6:7247050|7247221 hsa-miR-1538 1 0 0
chr6:7247050|7247221 hsa-miR-3138 1 0 0
chr6:7247050|7247221 hsa-miR-3185 0 1 0
chr6:7247050|7247221 hsa-miR-4302 1 0 0
chr6:7247050|7247221 hsa-miR-4251 0 1 0
chr6:7247050|7247221 hsa-miR-3916 0 1 0
chr6:7247050|7247221 hsa-miR-4479 1 1 0
chr6:7247050|7247221 hsa-miR-4744 0 1 0
chr6:7247050|7247221 hsa-miR-12128 1 1 0
chr6:7247050|7247221 hsa-miR-4435 0 1 0
chr6:7247050|7247221 hsa-miR-6809-5p 0 1 0
chr6:7247050|7247221 hsa-miR-6510-5p 0 1 0
chr6:7247050|7247221 hsa-miR-3677-5p 1 0 0
chr6:7247050|7247221 hsa-miR-4728-3p 1 0 0
chr6:7247050|7247221 hsa-miR-7108-5p 1 1 0
chr6:7247050|7247221 hsa-miR-4725-5p 1 0 0
chr6:7247050|7247221 hsa-miR-6760-5p 0 1 0
chr6:7247050|7247221 hsa-miR-3120-3p 0 1 0
chr6:7247050|7247221 hsa-miR-4750-3p 0 1 0
chr6:7247050|7247221 hsa-miR-6788-5p 1 0 0
chr6:7247050|7247221 hsa-miR-6879-5p 0 1 0
chr6:7247050|7247221 hsa-miR-6836-5p 1 0 0
chr6:7247050|7247221 hsa-miR-4649-5p 1 0 0
chr6:7247050|7247221 hsa-miR-4745-3p 1 0 0
chr6:7247050|7247221 hsa-miR-6831-5p 1 1 0
chr6:7247050|7247221 hsa-miR-1910-3p 0 1 0
chr6:7247050|7247221 hsa-miR-6511a-5p 0 1 0
chr6:7247050|7247221 hsa-miR-6856-5p 1 1 0
chr6:7247050|7247221 hsa-miR-6799-3p 1 0 0
chr6:7247050|7247221 hsa-miR-6859-5p 0 1 0
chr6:7247050|7247221 hsa-miR-10394-5p 0 1 0
chr6:7247050|7247221 hsa-miR-1234-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:7247050|7247221
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence LCGSACAGSGPAATRTACCTRCRPSSSCLPCWPRFWGSLSLVSCHRRSSLRTFSRPR
Nucleotide Sequence CTGTGTGGGAGCGCATGTGCCGGGTCAGGTCCTGCAGCGACCAGAACCGCTTGTTGCACACGCTGCAGACCTTCTTCCTCTTGTCTGCCTTGCTGGCCACGCTTTTGGGGGAGTCTGTCTTTGGTTTCTTGTCATCGTCGCTCTTCTCTGAGGACCTTTTCTCGGCCGCGC
CircID chr6:7247050|7247221
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MQRPEPLVAHAADLLPLVCLAGHAFGGVCLWFLVIVALL
Nucleotide Sequence CTGCAGCGACCAGAACCGCTTGTTGCACACGCTGCAGACCTTCTTCCTCTTGTCTGCCTTGCTGGCCACGCTTTTGGGGGAGTCTGTCTTTGGTTTCTTGTCATCGTCGCTCTTCTCTGA
CircID chr6:7247050|7247221
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MCRVRSCSDQNRLLHTLQTFFLLSALLATLLGESVFGFLSSSLFSEDLFSAA
Nucleotide Sequence ATGTGCCGGGTCAGGTCCTGCAGCGACCAGAACCGCTTGTTGCACACGCTGCAGACCTTCTTCCTCTTGTCTGCCTTGCTGGCCACGCTTTTGGGGGAGTCTGTCTTTGGTTTCTTGTCATCGTCGCTCTTCTCTGAGGACCTTTTCTCGGCCGCG
CircID chr6:7247050|7247221
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MTRNQRQTPPKAWPARQTRGRRSAACATSGSGRCRT
Nucleotide Sequence ATGACAAGAAACCAAAGACAGACTCCCCCAAAAGCGTGGCCAGCAAGGCAGACAAGAGGAAGAAGGTCTGCAGCGTGTGCAACAAGCGGTTCTGGTCGCTGCAGGACCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab