CircRNA Information

General Information
circRNA Basic Information
CircID chr6:75119116|75119446
Strand -
CircType exon
Host Gene ENSG00000111799.19;
Algorism CIRI2;
Sequence CTTAGGGACATTCTTCCTCATGCCGCTCTCCCAAGTCAAGACTTTCTCCTTGATAAACGTGAGGGCCTTGCCTACAGAATGTGGCATGGAAAATTTTAGTGTCACTTCAGTGAAAACTACCCAAATGCCATTAGTCACACCCAACTGATAAGAATCTGGATATCAGCATGAGATAATACACTCAGTTCTGCCACTACAAATGCTTGAAGAGTAAAGGTCTACATATACACATACCTGTTCTTGTGTTTCCTCCTCTGTACCTAATATTCTGGAGGGCCCCAAGGGCTAGGGCCTTGTCATTGTACGTGTTCAGCTTGAACTCAGACTTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:75119116|75119446 hsa-miR-134-5p 0 0 1
chr6:75119116|75119446 hsa-miR-134-3p 0 0 1
chr6:75119116|75119446 hsa-miR-498-5p 0 0 1
chr6:75119116|75119446 hsa-miR-498-3p 0 0 1
chr6:75119116|75119446 hsa-miR-573 0 0 1
chr6:75119116|75119446 hsa-miR-587 0 0 1
chr6:75119116|75119446 hsa-miR-609 0 0 1
chr6:75119116|75119446 hsa-miR-1264 0 0 1
chr6:75119116|75119446 hsa-miR-1256 0 0 1
chr6:75119116|75119446 hsa-miR-1262 0 0 1
chr6:75119116|75119446 hsa-miR-361-5p 0 0 1
chr6:75119116|75119446 hsa-miR-574-5p 0 0 1
chr6:75119116|75119446 hsa-miR-1225-5p 0 0 1
chr6:75119116|75119446 hsa-miR-331-5p 0 0 1
chr6:75119116|75119446 hsa-miR-142-3p 0 0 1
chr6:75119116|75119446 hsa-miR-129-3p 0 0 1
chr6:75119116|75119446 hsa-miR-4270 1 0 0
chr6:75119116|75119446 hsa-miR-3924 1 0 0
chr6:75119116|75119446 hsa-miR-4682 1 0 0
chr6:75119116|75119446 hsa-miR-4730 1 0 0
chr6:75119116|75119446 hsa-miR-4739 1 0 0
chr6:75119116|75119446 hsa-miR-4741 1 0 0
chr6:75119116|75119446 hsa-miR-8075 1 0 0
chr6:75119116|75119446 hsa-miR-12128 1 0 0
chr6:75119116|75119446 hsa-miR-6747-5p 1 0 0
chr6:75119116|75119446 hsa-miR-6746-5p 1 0 0
chr6:75119116|75119446 hsa-miR-3677-5p 1 0 0
chr6:75119116|75119446 hsa-miR-6820-5p 1 0 0
chr6:75119116|75119446 hsa-miR-874-3p 1 0 0
chr6:75119116|75119446 hsa-miR-3180-3p 1 0 0
chr6:75119116|75119446 hsa-miR-6772-5p 1 0 0
chr6:75119116|75119446 hsa-miR-615-5p 1 0 0
chr6:75119116|75119446 hsa-miR-6865-5p 1 0 0
chr6:75119116|75119446 hsa-miR-3180 1 0 0
chr6:75119116|75119446 hsa-miR-6743-5p 1 0 0
chr6:75119116|75119446 hsa-miR-6751-5p 1 0 0
chr6:75119116|75119446 hsa-miR-6797-5p 1 0 0
chr6:75119116|75119446 hsa-miR-6511a-5p 1 0 0
chr6:75119116|75119446 hsa-miR-6790-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:75119116|75119446
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MPLSQVKTFSLINVRALPTECGMENFSVTSVKTTQMPLVTPN
Nucleotide Sequence ATGCCGCTCTCCCAAGTCAAGACTTTCTCCTTGATAAACGTGAGGGCCTTGCCTACAGAATGTGGCATGGAAAATTTTAGTGTCACTTCAGTGAAAACTACCCAAATGCCATTAGTCACACCCAACTGA
CircID chr6:75119116|75119446
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MKSKGLHIHIPVLVFPPLYLIFWRAPRARALSLYVFSLNSDL
Nucleotide Sequence TTGAAGAGTAAAGGTCTACATATACACATACCTGTTCTTGTGTTTCCTCCTCTGTACCTAATATTCTGGAGGGCCCCAAGGGCTAGGGCCTTGTCATTGTACGTGTTCAGCTTGAACTCAGACTTG
CircID chr6:75119116|75119446
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MNTYNDKALALGALQNIRYRGGNTRTGMCICRPLLFKHL
Nucleotide Sequence CTGAACACGTACAATGACAAGGCCCTAGCCCTTGGGGCCCTCCAGAATATTAGGTACAGAGGAGGAAACACAAGAACAGGTATGTGTATATGTAGACCTTTACTCTTCAAGCATTTGTAG
CircID chr6:75119116|75119446
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MGPSRILGTEEETQEQVCVYVDLYSSSICSGRTECIISC
Nucleotide Sequence TTGGGGCCCTCCAGAATATTAGGTACAGAGGAGGAAACACAAGAACAGGTATGTGTATATGTAGACCTTTACTCTTCAAGCATTTGTAGTGGCAGAACTGAGTGTATTATCTCATGCTGA
CircID chr6:75119116|75119446
ORF Type ORF5
Protein Length 48
Nucleotide Length 144
Protein Sequence MGVTNGIWVVFTEVTLKFSMPHSVGKALTFIKEKVLTWESGMRKNVPK
Nucleotide Sequence TTGGGTGTGACTAATGGCATTTGGGTAGTTTTCACTGAAGTGACACTAAAATTTTCCATGCCACATTCTGTAGGCAAGGCCCTCACGTTTATCAAGGAGAAAGTCTTGACTTGGGAGAGCGGCATGAGGAAGAATGTCCCTAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab