CircRNA Information

General Information
circRNA Basic Information
CircID chr6:75647731|75659407
Strand +
CircType exon
Host Gene ENSG00000112701.17;
Algorism find_circ;CIRI2;DCC;
Sequence GAAAGAATACCCACCTCATGTCCAAAAAGTTGAAATTAATCCTGTAAGGTTAAGTCGGCTCCAAGGTGTTGAACGTATAATGAAGAAAACAGAAGAGTCCGAATCACAAGTGGAGCCTGAAATTAAGAGGAAAGTACAACAGAAACGACACTGTAGTACCTATCAGCCTACTCCTCCTCTATCTCCTGCTTCAAAAAAATGTTTAACCCATTTAGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:75647731|75659407 hsa-miR-186-5p 0 0 1
chr6:75647731|75659407 hsa-miR-186-3p 0 0 1
chr6:75647731|75659407 hsa-miR-370-5p 0 0 1
chr6:75647731|75659407 hsa-miR-370-3p 0 0 1
chr6:75647731|75659407 hsa-miR-570-5p 0 0 1
chr6:75647731|75659407 hsa-miR-570-3p 0 0 1
chr6:75647731|75659407 hsa-miR-653-5p 0 0 1
chr6:75647731|75659407 hsa-miR-653-3p 0 0 1
chr6:75647731|75659407 hsa-miR-660-5p 0 0 1
chr6:75647731|75659407 hsa-miR-660-3p 0 0 1
chr6:75647731|75659407 hsa-miR-887-5p 0 0 1
chr6:75647731|75659407 hsa-miR-887-3p 0 0 1
chr6:75647731|75659407 hsa-miR-1183 0 0 1
chr6:75647731|75659407 hsa-miR-548k 0 0 1
chr6:75647731|75659407 hsa-miR-1303 0 0 1
chr6:75647731|75659407 hsa-miR-513b-5p 0 0 1
chr6:75647731|75659407 hsa-miR-513b-3p 0 0 1
chr6:75647731|75659407 hsa-miR-139-5p 0 1 1
chr6:75647731|75659407 hsa-miR-486-5p 0 0 1
chr6:75647731|75659407 hsa-miR-1224-3p 0 1 1
chr6:75647731|75659407 hsa-miR-500 0 0 1
chr6:75647731|75659407 hsa-miR-203 0 0 1
chr6:75647731|75659407 hsa-miR-3185 1 0 0
chr6:75647731|75659407 hsa-miR-3916 0 1 0
chr6:75647731|75659407 hsa-miR-5192 0 1 0
chr6:75647731|75659407 hsa-miR-5193 0 1 0
chr6:75647731|75659407 hsa-miR-8054 0 1 0
chr6:75647731|75659407 hsa-miR-12115 0 1 0
chr6:75647731|75659407 hsa-miR-877-3p 0 1 0
chr6:75647731|75659407 hsa-miR-3925-5p 1 0 0
chr6:75647731|75659407 hsa-miR-6878-5p 1 0 0
chr6:75647731|75659407 hsa-miR-24-1-5p 0 1 0
chr6:75647731|75659407 hsa-miR-5197-3p 0 1 0
chr6:75647731|75659407 hsa-miR-6791-3p 0 1 0
chr6:75647731|75659407 hsa-miR-6876-5p 1 0 0
chr6:75647731|75659407 hsa-miR-3927-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr6:75647731|75659407
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MKKTEESESQVEPEIKRKVQQKRHCSTYQPTPPLSPASKKCLTHLE
Nucleotide Sequence ATGAAGAAAACAGAAGAGTCCGAATCACAAGTGGAGCCTGAAATTAAGAGGAAAGTACAACAGAAACGACACTGTAGTACCTATCAGCCTACTCCTCCTCTATCTCCTGCTTCAAAAAAATGTTTAACCCATTTAGAG
CircID chr6:75647731|75659407
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MKLRGKYNRNDTVVPISLLLLYLLLQKNV
Nucleotide Sequence CTGAAATTAAGAGGAAAGTACAACAGAAACGACACTGTAGTACCTATCAGCCTACTCCTCCTCTATCTCCTGCTTCAAAAAAATGTTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr6:75647731|75659407 NOP56 2 1 0
chr6:75647731|75659407 ELAVL1 14 4 1
chr6:75647731|75659407 ZNF184 0 0 2
chr6:75647731|75659407 SF3B4 1 0 0
chr6:75647731|75659407 FAM120A 0 1 1
chr6:75647731|75659407 PRPF8 2 4 0
chr6:75647731|75659407 FMR1 0 0 3
chr6:75647731|75659407 CPSF6 0 0 3
chr6:75647731|75659407 TIA1 2 0 0
chr6:75647731|75659407 TROVE2 1 0 0
chr6:75647731|75659407 FUS 1 2 0
chr6:75647731|75659407 GNL3 0 0 1
chr6:75647731|75659407 DGCR8 0 1 1
chr6:75647731|75659407 SRSF1 0 0 1
chr6:75647731|75659407 NOP58 5 2 2
chr6:75647731|75659407 SRSF3 0 1 0
chr6:75647731|75659407 U2AF1 2 0 1
chr6:75647731|75659407 U2AF2 28 18 11
chr6:75647731|75659407 DDX54 1 2 8
chr6:75647731|75659407 LSM11 0 0 1
chr6:75647731|75659407 RBM10 1 1 0
chr6:75647731|75659407 PCBP2 0 2 0
chr6:75647731|75659407 SF3A3 2 0 2
chr6:75647731|75659407 PTBP1 0 1 1
chr6:75647731|75659407 HNRNPC 14 1 0
chr6:75647731|75659407 HNRNPD 1 0 0
chr6:75647731|75659407 TRA2A 0 1 5
chr6:75647731|75659407 DHX9 0 0 1
chr6:75647731|75659407 HNRNPA1 9 0 0
chr6:75647731|75659407 DDX3X 2 0 0
chr6:75647731|75659407 SMNDC1 5 0 2
chr6:75647731|75659407 MSI2 1 0 0
chr6:75647731|75659407 ACIN1 1 0 2
chr6:75647731|75659407 LIN28B 0 0 2
chr6:75647731|75659407 FXR1 1 0 0
chr6:75647731|75659407 IGF2BP1 2 0 4
chr6:75647731|75659407 IGF2BP2 9 1 8
chr6:75647731|75659407 ELAVL3 3 0 0
chr6:75647731|75659407 TARDBP 0 1 1
chr6:75647731|75659407 BUD13 0 0 2
chr6:75647731|75659407 RBFOX2 1 0 0
chr6:75647731|75659407 RBM47 0 0 1
chr6:75647731|75659407 SLTM 1 0 0
chr6:75647731|75659407 EIF4G2 0 0 1
chr6:75647731|75659407 CSTF2T 0 1 2
chr6:75647731|75659407 YWHAG 2 0 0
chr6:75647731|75659407 TIAL1 4 0 0
chr6:75647731|75659407 DKC1 1 0 0
chr6:75647731|75659407 HNRNPK 0 1 0
chr6:75647731|75659407 EIF4A3 0 0 3
chr6:75647731|75659407 FBL 1 0 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab