CircRNA Information

General Information
circRNA Basic Information
CircID chr6:7582950|7583142
Strand +
CircType exon
Host Gene ENSG00000096696.12;
Algorism CIRI2;
Sequence GGTCCACTCACACTCAGTCTGGGTCTCTCGATGGGACCCATATGGGCGCTGTCTGAGTTTATCAATCTCCCTCTGATATCGGGAGCGTTCTGTTTCTAACTGTGACTGTGTCTCCCTGGTAGAATCCTCCAGCTTACGCCTGCACCTCTCTTCAATTCTCTTGATCTCTGCTTGGAGTCTTTCGATCTCACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr6:7582950|7583142 hsa-miR-27a-5p 0 0 1
chr6:7582950|7583142 hsa-miR-27a-3p 0 0 1
chr6:7582950|7583142 hsa-miR-27b-5p 0 0 1
chr6:7582950|7583142 hsa-miR-27b-3p 0 0 1
chr6:7582950|7583142 hsa-miR-335-5p 0 0 1
chr6:7582950|7583142 hsa-miR-335-3p 0 0 1
chr6:7582950|7583142 hsa-miR-765 0 0 1
chr6:7582950|7583142 hsa-miR-1324 0 1 1
chr6:7582950|7583142 hsa-miR-361-5p 0 0 1
chr6:7582950|7583142 hsa-miR-574-5p 0 1 1
chr6:7582950|7583142 hsa-miR-128 0 0 1
chr6:7582950|7583142 hsa-miR-601 1 0 0
chr6:7582950|7583142 hsa-miR-650 1 0 0
chr6:7582950|7583142 hsa-miR-658 1 0 0
chr6:7582950|7583142 hsa-miR-3174 1 0 0
chr6:7582950|7583142 hsa-miR-3175 1 0 0
chr6:7582950|7583142 hsa-miR-3197 1 0 0
chr6:7582950|7583142 hsa-miR-4270 0 1 0
chr6:7582950|7583142 hsa-miR-3929 0 1 0
chr6:7582950|7583142 hsa-miR-3936 1 0 0
chr6:7582950|7583142 hsa-miR-4466 1 0 0
chr6:7582950|7583142 hsa-miR-4494 0 1 0
chr6:7582950|7583142 hsa-miR-4499 0 1 0
chr6:7582950|7583142 hsa-miR-4510 0 1 0
chr6:7582950|7583142 hsa-miR-4683 1 0 0
chr6:7582950|7583142 hsa-miR-4689 1 0 0
chr6:7582950|7583142 hsa-miR-4706 1 0 0
chr6:7582950|7583142 hsa-miR-4739 1 0 0
chr6:7582950|7583142 hsa-miR-5186 0 1 0
chr6:7582950|7583142 hsa-miR-5192 1 0 0
chr6:7582950|7583142 hsa-miR-5695 0 1 0
chr6:7582950|7583142 hsa-miR-6088 1 0 0
chr6:7582950|7583142 hsa-miR-6129 0 1 0
chr6:7582950|7583142 hsa-miR-6165 1 0 0
chr6:7582950|7583142 hsa-miR-8085 1 0 0
chr6:7582950|7583142 hsa-miR-12114 1 0 0
chr6:7582950|7583142 hsa-miR-12122 0 1 0
chr6:7582950|7583142 hsa-miR-6799-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6510-5p 1 0 0
chr6:7582950|7583142 hsa-miR-139-3p 1 1 0
chr6:7582950|7583142 hsa-miR-7851-3p 1 0 0
chr6:7582950|7583142 hsa-miR-4709-3p 1 1 0
chr6:7582950|7583142 hsa-miR-4722-5p 1 0 0
chr6:7582950|7583142 hsa-miR-4655-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6798-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6760-5p 1 1 0
chr6:7582950|7583142 hsa-miR-2467-3p 1 0 0
chr6:7582950|7583142 hsa-miR-6782-5p 1 0 0
chr6:7582950|7583142 hsa-miR-5088-5p 1 0 0
chr6:7582950|7583142 hsa-miR-2277-3p 0 1 0
chr6:7582950|7583142 hsa-miR-6753-5p 0 1 0
chr6:7582950|7583142 hsa-miR-4690-5p 1 0 0
chr6:7582950|7583142 hsa-miR-877-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6847-5p 1 0 0
chr6:7582950|7583142 hsa-miR-149-3p 1 0 0
chr6:7582950|7583142 hsa-miR-7113-5p 1 1 0
chr6:7582950|7583142 hsa-miR-2277-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6893-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6754-5p 1 1 0
chr6:7582950|7583142 hsa-miR-6851-5p 1 0 0
chr6:7582950|7583142 hsa-miR-1249-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6722-3p 1 0 0
chr6:7582950|7583142 hsa-miR-6875-5p 1 0 0
chr6:7582950|7583142 hsa-miR-7111-5p 1 0 0
chr6:7582950|7583142 hsa-miR-4728-5p 1 0 0
chr6:7582950|7583142 hsa-miR-328-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6738-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6777-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6858-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6889-5p 1 0 0
chr6:7582950|7583142 hsa-miR-4769-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6511b-5p 0 1 0
chr6:7582950|7583142 hsa-miR-6758-5p 0 1 0
chr6:7582950|7583142 hsa-miR-6856-5p 1 1 0
chr6:7582950|7583142 hsa-miR-4665-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6750-5p 1 0 0
chr6:7582950|7583142 hsa-miR-6790-5p 0 1 0
chr6:7582950|7583142 hsa-miR-6529-5p 1 1 0
chr6:7582950|7583142 hsa-miR-4756-5p 1 0 0
chr6:7582950|7583142 hsa-miR-7161-5p 0 1 0
chr6:7582950|7583142 hsa-miR-1912-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr6:7582950|7583142
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MGLSMGPIWALSEFINLPLISGAFCF
Nucleotide Sequence CTGGGTCTCTCGATGGGACCCATATGGGCGCTGTCTGAGTTTATCAATCTCCCTCTGATATCGGGAGCGTTCTGTTTCTAA
CircID chr6:7582950|7583142
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MCLPGRILQLTPAPLFNSLDLCLESFDLT
Nucleotide Sequence CTGTGTCTCCCTGGTAGAATCCTCCAGCTTACGCCTGCACCTCTCTTCAATTCTCTTGATCTCTGCTTGGAGTCTTTCGATCTCACT
CircID chr6:7582950|7583142
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MVESSSLRLHLSSILLISAWSLSISL
Nucleotide Sequence CTGGTAGAATCCTCCAGCTTACGCCTGCACCTCTCTTCAATTCTCTTGATCTCTGCTTGGAGTCTTTCGATCTCACTC
CircID chr6:7582950|7583142
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MEDSTRETQSQLETERSRYQREIDKLRQRPYGSHRETQTECEWT
Nucleotide Sequence CTGGAGGATTCTACCAGGGAGACACAGTCACAGTTAGAAACAGAACGCTCCCGATATCAGAGGGAGATTGATAAACTCAGACAGCGCCCATATGGGTCCCATCGAGAGACCCAGACTGAGTGTGAGTGGACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab