CircRNA Information

General Information
circRNA Basic Information
CircID chr7:100033549|100033815
Strand +
CircType exon
Host Gene ENSG00000106261.15;
Algorism CIRI2;
Sequence TCGTTACATTCATGAGGTTTCTCTCCTGTGTGGATCCTCTGATGCAGGACAAGGTTGGAGTTAAGACTGAAGGCTTTCCCACACTCACTACATTCATAGGGCTTTTCTCCAGTGTGGATTATTTTATGGCGGATAAGGCTTGAACTTCTCGTGAAGCATTTACCACATTCATCACATCTGTGAGACTTTGTTCCCGTGGGAACTTCTTCAGGGGTGGTGAAGTTGGAGCTCAGACTGAAGCTTCTTCCCAATCCTTTCCCCTTCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:100033549|100033815 hsa-miR-197-5p 0 0 1
chr7:100033549|100033815 hsa-miR-197-3p 0 0 1
chr7:100033549|100033815 hsa-miR-185-5p 0 0 1
chr7:100033549|100033815 hsa-miR-185-3p 0 0 1
chr7:100033549|100033815 hsa-miR-412-5p 0 0 1
chr7:100033549|100033815 hsa-miR-412-3p 0 0 1
chr7:100033549|100033815 hsa-miR-498-5p 0 0 1
chr7:100033549|100033815 hsa-miR-498-3p 0 0 1
chr7:100033549|100033815 hsa-miR-622 0 0 1
chr7:100033549|100033815 hsa-miR-662 0 0 1
chr7:100033549|100033815 hsa-miR-921 0 0 1
chr7:100033549|100033815 hsa-miR-574-5p 0 0 1
chr7:100033549|100033815 hsa-miR-188-3p 0 0 1
chr7:100033549|100033815 hsa-miR-576-3p 0 0 1
chr7:100033549|100033815 hsa-miR-342-3p 0 0 1
chr7:100033549|100033815 hsa-miR-142-3p 0 0 1
chr7:100033549|100033815 hsa-miR-220b 0 0 1
chr7:100033549|100033815 hsa-miR-1260 0 0 1
chr7:100033549|100033815 hsa-miR-147a 0 1 0
chr7:100033549|100033815 hsa-miR-618 0 1 0
chr7:100033549|100033815 hsa-miR-1275 1 0 0
chr7:100033549|100033815 hsa-miR-2110 1 0 0
chr7:100033549|100033815 hsa-miR-3122 1 0 0
chr7:100033549|100033815 hsa-miR-3132 1 0 0
chr7:100033549|100033815 hsa-miR-3153 0 1 0
chr7:100033549|100033815 hsa-miR-3154 1 1 0
chr7:100033549|100033815 hsa-miR-3175 1 0 0
chr7:100033549|100033815 hsa-miR-3185 0 1 0
chr7:100033549|100033815 hsa-miR-3193 1 0 0
chr7:100033549|100033815 hsa-miR-4476 1 0 0
chr7:100033549|100033815 hsa-miR-4507 1 0 0
chr7:100033549|100033815 hsa-miR-4516 0 1 0
chr7:100033549|100033815 hsa-miR-4531 0 1 0
chr7:100033549|100033815 hsa-miR-3977 0 1 0
chr7:100033549|100033815 hsa-miR-4658 0 1 0
chr7:100033549|100033815 hsa-miR-4681 0 1 0
chr7:100033549|100033815 hsa-miR-4739 1 0 0
chr7:100033549|100033815 hsa-miR-4748 1 0 0
chr7:100033549|100033815 hsa-miR-5703 0 1 0
chr7:100033549|100033815 hsa-miR-6124 1 0 0
chr7:100033549|100033815 hsa-miR-8085 1 0 0
chr7:100033549|100033815 hsa-miR-12127 0 1 0
chr7:100033549|100033815 hsa-miR-6757-5p 1 0 0
chr7:100033549|100033815 hsa-miR-6730-5p 1 0 0
chr7:100033549|100033815 hsa-miR-6759-5p 1 0 0
chr7:100033549|100033815 hsa-miR-6783-5p 1 0 0
chr7:100033549|100033815 hsa-miR-491-5p 1 1 0
chr7:100033549|100033815 hsa-miR-1292-5p 1 1 0
chr7:100033549|100033815 hsa-miR-6798-5p 1 0 0
chr7:100033549|100033815 hsa-miR-6760-5p 1 0 0
chr7:100033549|100033815 hsa-miR-6881-5p 1 0 0
chr7:100033549|100033815 hsa-miR-6782-5p 1 0 0
chr7:100033549|100033815 hsa-miR-296-3p 1 1 0
chr7:100033549|100033815 hsa-miR-4713-3p 1 1 0
chr7:100033549|100033815 hsa-miR-3202 1 1 0
chr7:100033549|100033815 hsa-miR-378a-5p 1 0 0
chr7:100033549|100033815 hsa-miR-4661-3p 0 1 0
chr7:100033549|100033815 hsa-miR-3614-3p 0 1 0
chr7:100033549|100033815 hsa-miR-5007-5p 0 1 0
chr7:100033549|100033815 hsa-miR-1207-5p 1 0 0
chr7:100033549|100033815 hsa-miR-6812-5p 1 0 0
chr7:100033549|100033815 hsa-miR-6756-5p 1 0 0
chr7:100033549|100033815 hsa-miR-10401-5p 1 1 0
chr7:100033549|100033815 hsa-miR-6779-5p 1 0 0
chr7:100033549|100033815 hsa-miR-6780a-5p 1 0 0
chr7:100033549|100033815 hsa-miR-6754-3p 0 1 0
chr7:100033549|100033815 hsa-miR-5196-5p 1 1 0
chr7:100033549|100033815 hsa-miR-6780b-5p 1 1 0
chr7:100033549|100033815 hsa-miR-4649-5p 1 0 0
chr7:100033549|100033815 hsa-miR-4725-3p 1 1 0
chr7:100033549|100033815 hsa-miR-6729-5p 1 0 0
chr7:100033549|100033815 hsa-miR-6794-5p 1 0 0
chr7:100033549|100033815 hsa-miR-3940-5p 1 0 0
chr7:100033549|100033815 hsa-miR-30c-1-3p 1 0 0
chr7:100033549|100033815 hsa-miR-4646-5p 1 0 0
chr7:100033549|100033815 hsa-miR-4747-5p 1 1 0
chr7:100033549|100033815 hsa-miR-4716-3p 1 0 0
chr7:100033549|100033815 hsa-miR-6790-5p 0 1 0
chr7:100033549|100033815 hsa-miR-708-5p 0 1 0
chr7:100033549|100033815 hsa-miR-5692a 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:100033549|100033815
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MRFLSCVDPLMQDKVGVKTEGFPTLTTFIGLFSSVDYFMADKA
Nucleotide Sequence ATGAGGTTTCTCTCCTGTGTGGATCCTCTGATGCAGGACAAGGTTGGAGTTAAGACTGAAGGCTTTCCCACACTCACTACATTCATAGGGCTTTTCTCCAGTGTGGATTATTTTATGGCGGATAAGGCTTGA
CircID chr7:100033549|100033815
ORF Type ORF2
Protein Length 83
Nucleotide Length 249
Protein Sequence MGRSFSLSSNFTTPEEVPTGTKSHRCDECGKCFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLHQRIHTGEKPHECN
Nucleotide Sequence TTGGGAAGAAGCTTCAGTCTGAGCTCCAACTTCACCACCCCTGAAGAAGTTCCCACGGGAACAAAGTCTCACAGATGTGATGAATGTGGTAAATGCTTCACGAGAAGTTCAAGCCTTATCCGCCATAAAATAATCCACACTGGAGAAAAGCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGTCTTAACTCCAACCTTGTCCTGCATCAGAGGATCCACACAGGAGAGAAACCTCATGAATGTAAC
CircID chr7:100033549|100033815
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MKKFPREQSLTDVMNVVNASREVQALSAIK
Nucleotide Sequence CTGAAGAAGTTCCCACGGGAACAAAGTCTCACAGATGTGATGAATGTGGTAAATGCTTCACGAGAAGTTCAAGCCTTATCCGCCATAAAATAA
CircID chr7:100033549|100033815
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MEKSPMNVVSVGKPSVLTPTLSCIRGSTQERNLMNVT
Nucleotide Sequence CTGGAGAAAAGCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGTCTTAACTCCAACCTTGTCCTGCATCAGAGGATCCACACAGGAGAGAAACCTCATGAATGTAACG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab