CircRNA Information

General Information
circRNA Basic Information
CircID chr7:1009950|1010083
Strand -
CircType exon
Host Gene ENSG00000146540.13;
Algorism CIRI2;
Sequence CTGCAGAGGTAGTCCAGGGCCAGTTCGGCCCCCGAGCGCCTGGCAGGCGGGTGCTGGGCCACAAGGCCTGCCTCCCGCAGACGCTGCCTCTCCTCTTTCTTCCGTTCCTTTTTCAGCTTCCTTTCCAGGACCCT
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:1009950|1010083 hsa-miR-191-5p 0 0 1
chr7:1009950|1010083 hsa-miR-191-3p 0 0 1
chr7:1009950|1010083 hsa-miR-328-5p 0 0 1
chr7:1009950|1010083 hsa-miR-328-3p 0 0 1
chr7:1009950|1010083 hsa-miR-422a 0 0 1
chr7:1009950|1010083 hsa-miR-193b-5p 0 0 1
chr7:1009950|1010083 hsa-miR-193b-3p 0 0 1
chr7:1009950|1010083 hsa-miR-583 0 0 1
chr7:1009950|1010083 hsa-miR-650 0 1 1
chr7:1009950|1010083 hsa-miR-940 0 0 1
chr7:1009950|1010083 hsa-miR-663b 1 1 1
chr7:1009950|1010083 hsa-miR-1205 0 0 1
chr7:1009950|1010083 hsa-miR-1291 0 0 1
chr7:1009950|1010083 hsa-miR-1827 0 0 1
chr7:1009950|1010083 hsa-miR-885-3p 0 0 1
chr7:1009950|1010083 hsa-miR-1184 0 0 1
chr7:1009950|1010083 hsa-miR-875-3p 0 0 1
chr7:1009950|1010083 hsa-miR-193a-3p 0 0 1
chr7:1009950|1010083 hsa-miR-378 0 0 1
chr7:1009950|1010083 hsa-miR-346 1 0 0
chr7:1009950|1010083 hsa-miR-920 1 0 0
chr7:1009950|1010083 hsa-miR-1182 0 1 0
chr7:1009950|1010083 hsa-miR-3125 1 0 0
chr7:1009950|1010083 hsa-miR-3176 0 1 0
chr7:1009950|1010083 hsa-miR-3185 1 0 0
chr7:1009950|1010083 hsa-miR-4308 0 1 0
chr7:1009950|1010083 hsa-miR-4271 1 0 0
chr7:1009950|1010083 hsa-miR-4281 1 0 0
chr7:1009950|1010083 hsa-miR-3612 0 1 0
chr7:1009950|1010083 hsa-miR-4476 1 0 0
chr7:1009950|1010083 hsa-miR-4533 1 0 0
chr7:1009950|1010083 hsa-miR-4673 1 0 0
chr7:1009950|1010083 hsa-miR-4734 1 1 0
chr7:1009950|1010083 hsa-miR-4739 1 0 0
chr7:1009950|1010083 hsa-miR-4784 0 1 0
chr7:1009950|1010083 hsa-miR-5093 1 0 0
chr7:1009950|1010083 hsa-miR-6088 1 0 0
chr7:1009950|1010083 hsa-miR-6124 1 1 0
chr7:1009950|1010083 hsa-miR-6125 1 0 0
chr7:1009950|1010083 hsa-miR-12120 1 1 0
chr7:1009950|1010083 hsa-miR-671-5p 1 0 0
chr7:1009950|1010083 hsa-miR-3622a-5p 1 0 0
chr7:1009950|1010083 hsa-miR-4695-5p 1 0 0
chr7:1009950|1010083 hsa-miR-6746-5p 1 1 0
chr7:1009950|1010083 hsa-miR-6730-5p 1 0 0
chr7:1009950|1010083 hsa-miR-4755-3p 0 1 0
chr7:1009950|1010083 hsa-miR-770-5p 0 1 0
chr7:1009950|1010083 hsa-miR-7845-5p 1 0 0
chr7:1009950|1010083 hsa-miR-7108-5p 0 1 0
chr7:1009950|1010083 hsa-miR-1292-5p 1 0 0
chr7:1009950|1010083 hsa-miR-6760-5p 1 0 0
chr7:1009950|1010083 hsa-miR-6716-3p 0 1 0
chr7:1009950|1010083 hsa-miR-4763-5p 0 1 0
chr7:1009950|1010083 hsa-miR-204-3p 1 0 0
chr7:1009950|1010083 hsa-miR-1229-5p 1 0 0
chr7:1009950|1010083 hsa-miR-92b-5p 1 0 0
chr7:1009950|1010083 hsa-miR-149-3p 1 0 0
chr7:1009950|1010083 hsa-miR-6892-5p 1 0 0
chr7:1009950|1010083 hsa-miR-4485-5p 0 1 0
chr7:1009950|1010083 hsa-miR-1207-5p 1 0 0
chr7:1009950|1010083 hsa-miR-1233-5p 1 0 0
chr7:1009950|1010083 hsa-miR-6726-5p 1 0 0
chr7:1009950|1010083 hsa-miR-5196-5p 1 0 0
chr7:1009950|1010083 hsa-miR-449c-5p 0 1 0
chr7:1009950|1010083 hsa-miR-675-5p 1 0 0
chr7:1009950|1010083 hsa-miR-6848-5p 1 1 0
chr7:1009950|1010083 hsa-miR-6831-5p 1 0 0
chr7:1009950|1010083 hsa-miR-6856-5p 1 1 0
chr7:1009950|1010083 hsa-miR-3173-3p 1 0 0
chr7:1009950|1010083 hsa-miR-4646-5p 1 1 0
chr7:1009950|1010083 hsa-miR-4747-5p 1 0 0
chr7:1009950|1010083 hsa-miR-6876-5p 1 0 0
chr7:1009950|1010083 hsa-miR-6891-5p 1 0 0
chr7:1009950|1010083 hsa-miR-6750-5p 1 0 0
chr7:1009950|1010083 hsa-miR-4722-3p 0 1 0
chr7:1009950|1010083 hsa-miR-6775-3p 0 1 0
chr7:1009950|1010083 hsa-miR-6884-5p 1 1 0
chr7:1009950|1010083 hsa-miR-128-2-5p 0 1 0
chr7:1009950|1010083 hsa-miR-6811-5p 0 1 0
chr7:1009950|1010083 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:1009950|1010083
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MAGGCWATRPASRRRCLSSFFRSFFSFLSRT
Nucleotide Sequence CTGGCAGGCGGGTGCTGGGCCACAAGGCCTGCCTCCCGCAGACGCTGCCTCTCCTCTTTCTTCCGTTCCTTTTTCAGCTTCCTTTCCAGGACC
CircID chr7:1009950|1010083
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MGHKACLPQTLPLLFLPFLFQLPFQDP
Nucleotide Sequence CTGGGCCACAAGGCCTGCCTCCCGCAGACGCTGCCTCTCCTCTTTCTTCCGTTCCTTTTTCAGCTTCCTTTCCAGGACCCT
CircID chr7:1009950|1010083
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MERKLKKERKKEERQRLREAGLVAQHPPARRSGAELALDYLC
Nucleotide Sequence CTGGAAAGGAAGCTGAAAAAGGAACGGAAGAAAGAGGAGAGGCAGCGTCTGCGGGAGGCAGGCCTTGTGGCCCAGCACCCGCCTGCCAGGCGCTCGGGGGCCGAACTGGCCCTGGACTACCTCTGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab