CircRNA Information

General Information
circRNA Basic Information
CircID chr7:101138542|101138734
Strand -
CircType exon
Host Gene ENSG00000106366.8;
Algorism CIRI2;
Sequence AGAGTGGTTTCCAATGTGTTCAATAGATTTAGGAGCAGAAATGCAAGGGGCTGCATGACCTACCAGGACAGAACTTTCCCCAATTACAGGGTGACTCACAGCCGCATTGGTGACTCACTTCAATGTGTCATTTCCGGCTGCTGTGTGTGAGCAGTGGACACGTGAGGGGGGGGTGGGTGAGAGAGACAGGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:101138542|101138734 hsa-miR-33a-5p 0 0 1
chr7:101138542|101138734 hsa-miR-33a-3p 0 0 1
chr7:101138542|101138734 hsa-miR-10a-5p 0 0 1
chr7:101138542|101138734 hsa-miR-10a-3p 0 0 1
chr7:101138542|101138734 hsa-miR-10b-5p 0 0 1
chr7:101138542|101138734 hsa-miR-10b-3p 0 0 1
chr7:101138542|101138734 hsa-miR-377-5p 0 0 1
chr7:101138542|101138734 hsa-miR-377-3p 0 0 1
chr7:101138542|101138734 hsa-miR-425-5p 0 0 1
chr7:101138542|101138734 hsa-miR-425-3p 0 0 1
chr7:101138542|101138734 hsa-miR-573 0 0 1
chr7:101138542|101138734 hsa-miR-593-5p 0 0 1
chr7:101138542|101138734 hsa-miR-593-3p 0 0 1
chr7:101138542|101138734 hsa-miR-33b-5p 0 0 1
chr7:101138542|101138734 hsa-miR-33b-3p 0 0 1
chr7:101138542|101138734 hsa-miR-1178-5p 0 0 1
chr7:101138542|101138734 hsa-miR-1178-3p 0 0 1
chr7:101138542|101138734 hsa-miR-1229-5p 0 0 1
chr7:101138542|101138734 hsa-miR-1229-3p 0 0 1
chr7:101138542|101138734 hsa-miR-767-3p 0 1 1
chr7:101138542|101138734 hsa-miR-342-3p 0 0 1
chr7:101138542|101138734 hsa-miR-544 0 0 1
chr7:101138542|101138734 hsa-miR-1913 1 0 0
chr7:101138542|101138734 hsa-miR-2110 1 0 0
chr7:101138542|101138734 hsa-miR-3174 0 1 0
chr7:101138542|101138734 hsa-miR-3175 1 0 0
chr7:101138542|101138734 hsa-miR-5192 1 0 0
chr7:101138542|101138734 hsa-miR-7974 0 1 0
chr7:101138542|101138734 hsa-miR-10226 1 0 0
chr7:101138542|101138734 hsa-miR-11400 0 1 0
chr7:101138542|101138734 hsa-miR-187-3p 1 0 0
chr7:101138542|101138734 hsa-miR-134-3p 0 1 0
chr7:101138542|101138734 hsa-miR-214-5p 0 1 0
chr7:101138542|101138734 hsa-miR-3150a-3p 1 0 0
chr7:101138542|101138734 hsa-miR-6857-5p 1 0 0
chr7:101138542|101138734 hsa-miR-6873-3p 0 1 0
chr7:101138542|101138734 hsa-miR-7110-3p 1 1 0
chr7:101138542|101138734 hsa-miR-6841-3p 0 1 0
chr7:101138542|101138734 hsa-miR-6783-5p 1 0 0
chr7:101138542|101138734 hsa-miR-6774-3p 0 1 0
chr7:101138542|101138734 hsa-miR-6882-3p 0 1 0
chr7:101138542|101138734 hsa-miR-6772-3p 1 1 0
chr7:101138542|101138734 hsa-miR-7108-3p 1 0 0
chr7:101138542|101138734 hsa-miR-6803-3p 1 0 0
chr7:101138542|101138734 hsa-miR-6514-3p 1 1 0
chr7:101138542|101138734 hsa-miR-6818-3p 0 1 0
chr7:101138542|101138734 hsa-miR-6830-3p 1 0 0
chr7:101138542|101138734 hsa-miR-937-5p 0 1 0
chr7:101138542|101138734 hsa-miR-7156-3p 0 1 0
chr7:101138542|101138734 hsa-miR-1306-5p 1 0 0
chr7:101138542|101138734 hsa-miR-6769a-3p 0 1 0
chr7:101138542|101138734 hsa-miR-6854-3p 0 1 0
chr7:101138542|101138734 hsa-miR-1224-3p 1 0 0
chr7:101138542|101138734 hsa-miR-625-5p 1 1 0
chr7:101138542|101138734 hsa-miR-6895-3p 0 1 0
chr7:101138542|101138734 hsa-miR-4750-3p 1 1 0
chr7:101138542|101138734 hsa-miR-6729-3p 1 0 0
chr7:101138542|101138734 hsa-miR-3162-3p 1 0 0
chr7:101138542|101138734 hsa-miR-6509-3p 0 1 0
chr7:101138542|101138734 hsa-miR-6812-5p 1 0 0
chr7:101138542|101138734 hsa-miR-1343-5p 1 0 0
chr7:101138542|101138734 hsa-miR-642b-3p 0 1 0
chr7:101138542|101138734 hsa-miR-6780b-5p 1 0 0
chr7:101138542|101138734 hsa-miR-4725-3p 1 0 0
chr7:101138542|101138734 hsa-miR-324-3p 1 1 0
chr7:101138542|101138734 hsa-miR-6784-3p 1 1 0
chr7:101138542|101138734 hsa-miR-6862-3p 1 1 0
chr7:101138542|101138734 hsa-miR-6511b-3p 1 0 0
chr7:101138542|101138734 hsa-miR-7114-3p 1 1 0
chr7:101138542|101138734 hsa-miR-642a-3p 0 1 0
chr7:101138542|101138734 hsa-miR-6833-3p 1 1 0
chr7:101138542|101138734 hsa-miR-6766-3p 1 0 0
chr7:101138542|101138734 hsa-miR-5699-3p 0 1 0
chr7:101138542|101138734 hsa-miR-412-3p 1 0 0
chr7:101138542|101138734 hsa-miR-4789-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:101138542|101138734
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MTYQDRTFPNYRVTHSRIGDSLQCVISGCCV
Nucleotide Sequence ATGACCTACCAGGACAGAACTTTCCCCAATTACAGGGTGACTCACAGCCGCATTGGTGACTCACTTCAATGTGTCATTTCCGGCTGCTGTGTGTGA
CircID chr7:101138542|101138734
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MVTHFNVSFPAAVCEQWTREGGVGERDRQ
Nucleotide Sequence TTGGTGACTCACTTCAATGTGTCATTTCCGGCTGCTGTGTGTGAGCAGTGGACACGTGAGGGGGGGGTGGGTGAGAGAGACAGGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab