CircRNA Information

General Information
circRNA Basic Information
CircID chr7:112286873|112287074
Strand +
CircType exon
Host Gene ENSG00000198839.9;
Algorism find_circ;CIRI2;DCC;
Sequence ACAGTAAGGATTGTATCCTGGAGCCGCTTTCCCTGCCAGAAAGTCCAGGTGGCACCACCACTTTAGAAGGTTCTCCATCTGTGCCTTGTATTTTCTGTGAAGAACATTTTCCTGTGGCTGAACAAGACAAACTTCTGAAGCACATGATTATTGAGCATAAGATTGTCATAGCTGATGTCAAGTTGGTTGCTGATTTCCAAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:112286873|112287074 hsa-miR-136-5p 0 0 1
chr7:112286873|112287074 hsa-miR-136-3p 0 0 1
chr7:112286873|112287074 hsa-miR-643 0 0 1
chr7:112286873|112287074 hsa-miR-628-5p 0 0 1
chr7:112286873|112287074 hsa-miR-508-3p 0 1 1
chr7:112286873|112287074 hsa-miR-515-5p 0 0 1
chr7:112286873|112287074 hsa-miR-220b 0 0 1
chr7:112286873|112287074 hsa-miR-1274a 0 0 1
chr7:112286873|112287074 hsa-miR-550 0 0 1
chr7:112286873|112287074 hsa-miR-219-5p 0 0 1
chr7:112286873|112287074 hsa-miR-4254 0 1 0
chr7:112286873|112287074 hsa-miR-3945 1 0 0
chr7:112286873|112287074 hsa-miR-8075 0 1 0
chr7:112286873|112287074 hsa-miR-128-1-5p 1 0 0
chr7:112286873|112287074 hsa-miR-139-3p 1 0 0
chr7:112286873|112287074 hsa-miR-4474-3p 0 1 0
chr7:112286873|112287074 hsa-miR-1343-3p 0 1 0
chr7:112286873|112287074 hsa-miR-4446-5p 1 1 0
chr7:112286873|112287074 hsa-miR-6743-3p 1 0 0
chr7:112286873|112287074 hsa-miR-5000-3p 0 1 0
chr7:112286873|112287074 hsa-miR-597-3p 0 1 0
chr7:112286873|112287074 hsa-miR-7151-5p 1 1 0
chr7:112286873|112287074 hsa-miR-541-5p 0 1 0
chr7:112286873|112287074 hsa-miR-6815-5p 0 1 0
chr7:112286873|112287074 hsa-miR-4722-3p 0 1 0
chr7:112286873|112287074 hsa-miR-9851-3p 1 1 0
chr7:112286873|112287074 hsa-miR-6859-5p 1 0 0
chr7:112286873|112287074 hsa-miR-4315 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:112286873|112287074
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MTILCSIIMCFRSLSCSATGKCSSQKIQGTDGEPSKVVVPPGLSGRESGSRIQSLL
Nucleotide Sequence ATGACAATCTTATGCTCAATAATCATGTGCTTCAGAAGTTTGTCTTGTTCAGCCACAGGAAAATGTTCTTCACAGAAAATACAAGGCACAGATGGAGAACCTTCTAAAGTGGTGGTGCCACCTGGACTTTCTGGCAGGGAAAGCGGCTCCAGGATACAATCCTTACTG
CircID chr7:112286873|112287074
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MLNNHVLQKFVLFSHRKMFFTENTRHRWRTF*
Nucleotide Sequence ATGCTCAATAATCATGTGCTTCAGAAGTTTGTCTTGTTCAGCCACAGGAAAATGTTCTTCACAGAAAATACAAGGCACAGATGGAGAACCTTCTAA
CircID chr7:112286873|112287074
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence MTSAMTILCSIIMCFRSLSCSATGKCSSQKIQGTDGEPSKVVVPPGLSGRESGSRIQSLL
Nucleotide Sequence TTGACATCAGCTATGACAATCTTATGCTCAATAATCATGTGCTTCAGAAGTTTGTCTTGTTCAGCCACAGGAAAATGTTCTTCACAGAAAATACAAGGCACAGATGGAGAACCTTCTAAAGTGGTGGTGCCACCTGGACTTTCTGGCAGGGAAAGCGGCTCCAGGATACAATCCTTACTG
CircID chr7:112286873|112287074
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MENLLKWWCHLDFLAGKAAPGYNPYC
Nucleotide Sequence ATGGAGAACCTTCTAAAGTGGTGGTGCCACCTGGACTTTCTGGCAGGGAAAGCGGCTCCAGGATACAATCCTTACTGT
CircID chr7:112286873|112287074
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence LEISNQLDISYDNLMLNNHVLQKFVLFSHRKMFFTENTRHRWRTF
Nucleotide Sequence TTGGAAATCAGCAACCAACTTGACATCAGCTATGACAATCTTATGCTCAATAATCATGTGCTTCAGAAGTTTGTCTTGTTCAGCCACAGGAAAATGTTCTTCACAGAAAATACAAGGCACAGATGGAGAACCTTCTAA
CircID chr7:112286873|112287074
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MYPGAAFPARKSRWHHHFRRFSICALYFL
Nucleotide Sequence TTGTATCCTGGAGCCGCTTTCCCTGCCAGAAAGTCCAGGTGGCACCACCACTTTAGAAGGTTCTCCATCTGTGCCTTGTATTTTCTGTGA
CircID chr7:112286873|112287074
ORF Type ORF5
Protein Length 61
Nucleotide Length 183
Protein Sequence MEPLSLPESPGGTTTLEGSPSVPCIFCEEHFPVAEQDKLLKHMIIEHKIVIADVKLVADFQ
Nucleotide Sequence CTGGAGCCGCTTTCCCTGCCAGAAAGTCCAGGTGGCACCACCACTTTAGAAGGTTCTCCATCTGTGCCTTGTATTTTCTGTGAAGAACATTTTCCTGTGGCTGAACAAGACAAACTTCTGAAGCACATGATTATTGAGCATAAGATTGTCATAGCTGATGTCAAGTTGGTTGCTGATTTCCAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr7:112286873|112287074 WDR33 0 1 0
chr7:112286873|112287074 HNRNPC 1 2 0
chr7:112286873|112287074 DICER1 0 1 0
chr7:112286873|112287074 ELAVL1 1 6 0
chr7:112286873|112287074 ADAR 0 7 0
chr7:112286873|112287074 U2AF2 23 22 0
chr7:112286873|112287074 SRSF9 0 0 1
chr7:112286873|112287074 DDX54 0 0 1
chr7:112286873|112287074 RBFOX2 0 1 0
chr7:112286873|112287074 CNBP 0 0 1
chr7:112286873|112287074 HNRNPA1 0 13 0
chr7:112286873|112287074 TAF15 1 0 0
chr7:112286873|112287074 IGF2BP1 1 1 2
chr7:112286873|112287074 SRSF1 0 2 0
chr7:112286873|112287074 IGF2BP3 0 2 1
chr7:112286873|112287074 IGF2BP2 1 0 4
chr7:112286873|112287074 PTBP1 18 1 0
chr7:112286873|112287074 EIF4A3 2 0 2
chr7:112286873|112287074 NOP58 1 0 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab