CircRNA Information

General Information
circRNA Basic Information
CircID chr7:128846103|128846376
Strand -
CircType exon
Host Gene ENSG00000128591.14;
Algorism CIRI2;
Sequence ACCTATGTGACAGACAATGGGGACGGCACCTACCGAGTGCAGTACACCGCCTACGAGGAGGGTGAGGGCCGGTGGGCCAGGCTAGTGGGCAGGGCTGGGCAAGTGGGCAGGGCCGGGATCTGATGATATTGCCCTCGGGGCAGGAGGGGTGGTGGGGGCGCACACTCCCTGATTGATGCCCCTGTGGCTGGCTTCCAGGCGTGCATCTGGTGGAGGTCCTGTATGATGAGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGACCGAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:128846103|128846376 hsa-miR-217-5p 0 0 1
chr7:128846103|128846376 hsa-miR-217-3p 0 0 1
chr7:128846103|128846376 hsa-miR-122-5p 0 0 1
chr7:128846103|128846376 hsa-miR-122-3p 0 0 1
chr7:128846103|128846376 hsa-miR-487a-5p 0 0 1
chr7:128846103|128846376 hsa-miR-487a-3p 0 0 1
chr7:128846103|128846376 hsa-miR-596 0 0 1
chr7:128846103|128846376 hsa-miR-632 0 0 1
chr7:128846103|128846376 hsa-miR-635 0 1 1
chr7:128846103|128846376 hsa-miR-648 0 0 1
chr7:128846103|128846376 hsa-miR-933 0 0 1
chr7:128846103|128846376 hsa-miR-1231 0 0 1
chr7:128846103|128846376 hsa-miR-1291 0 1 1
chr7:128846103|128846376 hsa-miR-671-5p 1 1 1
chr7:128846103|128846376 hsa-miR-574-5p 0 0 1
chr7:128846103|128846376 hsa-miR-324-3p 0 0 1
chr7:128846103|128846376 hsa-miR-485-3p 0 1 1
chr7:128846103|128846376 hsa-miR-509-3-5p 0 0 1
chr7:128846103|128846376 hsa-miR-509-5p 0 0 1
chr7:128846103|128846376 hsa-miR-220b 0 0 1
chr7:128846103|128846376 hsa-miR-1280 0 0 1
chr7:128846103|128846376 hsa-miR-220c 0 0 1
chr7:128846103|128846376 hsa-miR-1254 0 0 1
chr7:128846103|128846376 hsa-miR-346 1 0 0
chr7:128846103|128846376 hsa-miR-631 1 0 0
chr7:128846103|128846376 hsa-miR-661 1 0 0
chr7:128846103|128846376 hsa-miR-940 1 0 0
chr7:128846103|128846376 hsa-miR-1913 1 0 0
chr7:128846103|128846376 hsa-miR-1976 0 1 0
chr7:128846103|128846376 hsa-miR-3154 1 0 0
chr7:128846103|128846376 hsa-miR-3176 1 0 0
chr7:128846103|128846376 hsa-miR-4301 0 1 0
chr7:128846103|128846376 hsa-miR-4313 1 0 0
chr7:128846103|128846376 hsa-miR-4489 1 0 0
chr7:128846103|128846376 hsa-miR-4688 0 1 0
chr7:128846103|128846376 hsa-miR-5100 1 1 0
chr7:128846103|128846376 hsa-miR-6072 0 1 0
chr7:128846103|128846376 hsa-miR-7703 0 1 0
chr7:128846103|128846376 hsa-miR-12128 0 1 0
chr7:128846103|128846376 hsa-miR-12129 0 1 0
chr7:128846103|128846376 hsa-miR-6749-3p 1 0 0
chr7:128846103|128846376 hsa-miR-4700-3p 0 1 0
chr7:128846103|128846376 hsa-miR-3194-3p 1 0 0
chr7:128846103|128846376 hsa-miR-149-5p 1 1 0
chr7:128846103|128846376 hsa-miR-191-3p 1 0 0
chr7:128846103|128846376 hsa-miR-1915-5p 1 1 0
chr7:128846103|128846376 hsa-miR-4697-3p 1 0 0
chr7:128846103|128846376 hsa-miR-3194-5p 1 1 0
chr7:128846103|128846376 hsa-miR-6858-3p 1 0 0
chr7:128846103|128846376 hsa-miR-4436b-5p 1 1 0
chr7:128846103|128846376 hsa-miR-6884-3p 0 1 0
chr7:128846103|128846376 hsa-miR-4763-5p 1 0 0
chr7:128846103|128846376 hsa-miR-4786-3p 0 1 0
chr7:128846103|128846376 hsa-miR-6771-5p 1 1 0
chr7:128846103|128846376 hsa-miR-3677-3p 1 0 0
chr7:128846103|128846376 hsa-miR-4667-3p 0 1 0
chr7:128846103|128846376 hsa-miR-3616-3p 0 1 0
chr7:128846103|128846376 hsa-miR-6789-5p 0 1 0
chr7:128846103|128846376 hsa-miR-4687-5p 1 0 0
chr7:128846103|128846376 hsa-miR-4758-3p 1 0 0
chr7:128846103|128846376 hsa-miR-1910-5p 1 0 0
chr7:128846103|128846376 hsa-miR-744-5p 1 0 0
chr7:128846103|128846376 hsa-miR-6741-3p 1 1 0
chr7:128846103|128846376 hsa-miR-6752-3p 0 1 0
chr7:128846103|128846376 hsa-miR-4749-3p 1 1 0
chr7:128846103|128846376 hsa-miR-328-3p 1 0 0
chr7:128846103|128846376 hsa-miR-1178-3p 0 1 0
chr7:128846103|128846376 hsa-miR-4750-3p 1 0 0
chr7:128846103|128846376 hsa-miR-3173-5p 0 1 0
chr7:128846103|128846376 hsa-miR-6779-3p 0 1 0
chr7:128846103|128846376 hsa-miR-5587-3p 0 1 0
chr7:128846103|128846376 hsa-miR-4787-3p 0 1 0
chr7:128846103|128846376 hsa-miR-675-3p 1 0 0
chr7:128846103|128846376 hsa-miR-4740-3p 1 0 0
chr7:128846103|128846376 hsa-miR-4763-3p 1 0 0
chr7:128846103|128846376 hsa-miR-6775-5p 1 0 0
chr7:128846103|128846376 hsa-miR-6743-5p 1 1 0
chr7:128846103|128846376 hsa-miR-6752-5p 1 0 0
chr7:128846103|128846376 hsa-miR-6756-5p 1 0 0
chr7:128846103|128846376 hsa-miR-6851-5p 1 0 0
chr7:128846103|128846376 hsa-miR-6774-5p 1 1 0
chr7:128846103|128846376 hsa-miR-4728-5p 1 0 0
chr7:128846103|128846376 hsa-miR-365a-5p 1 0 0
chr7:128846103|128846376 hsa-miR-6799-3p 0 1 0
chr7:128846103|128846376 hsa-miR-3116 0 1 0
chr7:128846103|128846376 hsa-miR-193b-3p 1 1 0
chr7:128846103|128846376 hsa-miR-6511a-3p 1 1 0
chr7:128846103|128846376 hsa-miR-6862-3p 0 1 0
chr7:128846103|128846376 hsa-miR-6805-3p 1 0 0
chr7:128846103|128846376 hsa-miR-6810-3p 0 1 0
chr7:128846103|128846376 hsa-miR-6775-3p 1 1 0
chr7:128846103|128846376 hsa-miR-10392-3p 1 0 0
chr7:128846103|128846376 hsa-miR-6511b-3p 1 1 0
chr7:128846103|128846376 hsa-miR-6891-3p 0 1 0
chr7:128846103|128846376 hsa-miR-4756-5p 1 0 0
chr7:128846103|128846376 hsa-miR-4670-5p 0 1 0
chr7:128846103|128846376 hsa-miR-487b-3p 1 1 0
chr7:128846103|128846376 hsa-miR-539-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:128846103|128846376
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MIDAPVAGFQACIWWRSCMMRSLCPRAPSEWA
Nucleotide Sequence CTGATTGATGCCCCTGTGGCTGGCTTCCAGGCGTGCATCTGGTGGAGGTCCTGTATGATGAGGTCGCTGTGCCCAAGAGCCCCTTCCGAGTGGGCGTGA
CircID chr7:128846103|128846376
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MGKWAGPGSDDIALGAGGVVGAHTP
Nucleotide Sequence CTGGGCAAGTGGGCAGGGCCGGGATCTGATGATATTGCCCTCGGGGCAGGAGGGGTGGTGGGGGCGCACACTCCCTGA
CircID chr7:128846103|128846376
ORF Type ORF3
Protein Length 81
Nucleotide Length 243
Protein Sequence MGTATSSYRTSTRCTPGSQPQGHQSGSVRPHHPSCPEGNIIRSRPCPLAQPCPLAWPTGPHPPRRRCTALGRCRPHCLSHR
Nucleotide Sequence TTGGGCACAGCGACCTCATCATACAGGACCTCCACCAGATGCACGCCTGGAAGCCAGCCACAGGGGCATCAATCAGGGAGTGTGCGCCCCCACCACCCCTCCTGCCCCGAGGGCAATATCATCAGATCCCGGCCCTGCCCACTTGCCCAGCCCTGCCCACTAGCCTGGCCCACCGGCCCTCACCCTCCTCGTAGGCGGTGTACTGCACTCGGTAGGTGCCGTCCCCATTGTCTGTCACATAGG
CircID chr7:128846103|128846376
ORF Type ORF4
Protein Length 38
Nucleotide Length 117
Protein Sequence MEASHRGINQGVCAPTTPPAPRAISSDPGPAHLPSPAH
Nucleotide Sequence CTGGAAGCCAGCCACAGGGGCATCAATCAGGGAGTGTGCGCCCCCACCACCCCTCCTGCCCCGAGGGCAATATCATCAGATCCCGGCCCTGCCCACTTGCCCAGCCCTGCCCACTAG
CircID chr7:128846103|128846376
ORF Type ORF5
Protein Length 51
Nucleotide Length 156
Protein Sequence MHAWKPATGASIRECAPPPPLLPRGQYHQIPALPTCPALPTSLAHRPSPSS
Nucleotide Sequence ATGCACGCCTGGAAGCCAGCCACAGGGGCATCAATCAGGGAGTGTGCGCCCCCACCACCCCTCCTGCCCCGAGGGCAATATCATCAGATCCCGGCCCTGCCCACTTGCCCAGCCCTGCCCACTAGCCTGGCCCACCGGCCCTCACCCTCCTCGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab