CircRNA Information

General Information
circRNA Basic Information
CircID chr7:130133259|130133428
Strand -
CircType exon
Host Gene ENSG00000128607.12;
Algorism CIRI2;
Sequence CTATAACCAGCACTCGGAATTCCTGACACTGTTTACTTGATTTAGGAAAGTTTATGCCTGCTGCTTCTCTGCCTCTTTGAGGTACTCCCAGCCGTCTTACTACAGTCCTGTAAATTTAAGTGCAATATATAGAAACATATGGATATATACAGATTATATATAGGGTGTAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:130133259|130133428 hsa-miR-15a-5p 0 0 1
chr7:130133259|130133428 hsa-miR-15a-3p 0 0 1
chr7:130133259|130133428 hsa-miR-25-5p 0 0 1
chr7:130133259|130133428 hsa-miR-25-3p 0 0 1
chr7:130133259|130133428 hsa-miR-26b-5p 0 0 1
chr7:130133259|130133428 hsa-miR-26b-3p 0 0 1
chr7:130133259|130133428 hsa-miR-30a-5p 0 0 1
chr7:130133259|130133428 hsa-miR-30a-3p 0 0 1
chr7:130133259|130133428 hsa-miR-32-5p 0 0 1
chr7:130133259|130133428 hsa-miR-32-3p 0 0 1
chr7:130133259|130133428 hsa-miR-208a-5p 0 0 1
chr7:130133259|130133428 hsa-miR-208a-3p 0 0 1
chr7:130133259|130133428 hsa-miR-30d-5p 0 0 1
chr7:130133259|130133428 hsa-miR-30d-3p 0 0 1
chr7:130133259|130133428 hsa-miR-214-5p 0 0 1
chr7:130133259|130133428 hsa-miR-214-3p 0 0 1
chr7:130133259|130133428 hsa-miR-15b-5p 0 0 1
chr7:130133259|130133428 hsa-miR-15b-3p 0 0 1
chr7:130133259|130133428 hsa-miR-30b-5p 0 0 1
chr7:130133259|130133428 hsa-miR-30b-3p 0 0 1
chr7:130133259|130133428 hsa-miR-195-5p 0 0 1
chr7:130133259|130133428 hsa-miR-195-3p 0 0 1
chr7:130133259|130133428 hsa-miR-30e-5p 0 0 1
chr7:130133259|130133428 hsa-miR-30e-3p 0 0 1
chr7:130133259|130133428 hsa-miR-363-5p 0 0 1
chr7:130133259|130133428 hsa-miR-363-3p 0 0 1
chr7:130133259|130133428 hsa-miR-367-5p 0 0 1
chr7:130133259|130133428 hsa-miR-367-3p 0 0 1
chr7:130133259|130133428 hsa-miR-384 0 0 1
chr7:130133259|130133428 hsa-miR-424-5p 0 0 1
chr7:130133259|130133428 hsa-miR-424-3p 0 0 1
chr7:130133259|130133428 hsa-miR-410-5p 0 0 1
chr7:130133259|130133428 hsa-miR-410-3p 0 0 1
chr7:130133259|130133428 hsa-miR-497-5p 0 0 1
chr7:130133259|130133428 hsa-miR-497-3p 0 0 1
chr7:130133259|130133428 hsa-miR-92b-5p 0 0 1
chr7:130133259|130133428 hsa-miR-92b-3p 0 0 1
chr7:130133259|130133428 hsa-miR-583 0 0 1
chr7:130133259|130133428 hsa-miR-873-5p 0 0 1
chr7:130133259|130133428 hsa-miR-873-3p 0 0 1
chr7:130133259|130133428 hsa-miR-208b-5p 0 0 1
chr7:130133259|130133428 hsa-miR-208b-3p 0 0 1
chr7:130133259|130133428 hsa-miR-1183 1 1 1
chr7:130133259|130133428 hsa-miR-1297 0 0 1
chr7:130133259|130133428 hsa-miR-1827 0 0 1
chr7:130133259|130133428 hsa-miR-512-3p 0 0 1
chr7:130133259|130133428 hsa-miR-513a-3p 0 0 1
chr7:130133259|130133428 hsa-miR-16 0 0 1
chr7:130133259|130133428 hsa-miR-30c 0 0 1
chr7:130133259|130133428 hsa-miR-138 0 0 1
chr7:130133259|130133428 hsa-miR-26a 0 0 1
chr7:130133259|130133428 hsa-miR-92a 0 0 1
chr7:130133259|130133428 hsa-miR-762 1 0 0
chr7:130133259|130133428 hsa-miR-761 0 1 0
chr7:130133259|130133428 hsa-miR-297 0 1 0
chr7:130133259|130133428 hsa-miR-1299 1 0 0
chr7:130133259|130133428 hsa-miR-3169 0 1 0
chr7:130133259|130133428 hsa-miR-3171 0 1 0
chr7:130133259|130133428 hsa-miR-4465 0 1 0
chr7:130133259|130133428 hsa-miR-4656 1 0 0
chr7:130133259|130133428 hsa-miR-4741 1 0 0
chr7:130133259|130133428 hsa-miR-5090 1 0 0
chr7:130133259|130133428 hsa-miR-5787 1 0 0
chr7:130133259|130133428 hsa-miR-8052 1 0 0
chr7:130133259|130133428 hsa-miR-8072 1 0 0
chr7:130133259|130133428 hsa-miR-4700-3p 0 1 0
chr7:130133259|130133428 hsa-miR-4433a-3p 1 0 0
chr7:130133259|130133428 hsa-miR-6765-5p 1 0 0
chr7:130133259|130133428 hsa-miR-3622a-5p 1 0 0
chr7:130133259|130133428 hsa-miR-4695-5p 1 1 0
chr7:130133259|130133428 hsa-miR-2467-3p 1 0 0
chr7:130133259|130133428 hsa-miR-4690-5p 0 1 0
chr7:130133259|130133428 hsa-miR-6749-5p 1 0 0
chr7:130133259|130133428 hsa-miR-3162-5p 1 0 0
chr7:130133259|130133428 hsa-miR-4740-5p 1 0 0
chr7:130133259|130133428 hsa-miR-6733-3p 0 1 0
chr7:130133259|130133428 hsa-miR-1207-5p 1 0 0
chr7:130133259|130133428 hsa-miR-4763-3p 1 0 0
chr7:130133259|130133428 hsa-miR-5001-5p 1 0 0
chr7:130133259|130133428 hsa-miR-6743-5p 1 0 0
chr7:130133259|130133428 hsa-miR-6808-5p 1 0 0
chr7:130133259|130133428 hsa-miR-4685-5p 1 0 0
chr7:130133259|130133428 hsa-miR-6735-5p 1 0 0
chr7:130133259|130133428 hsa-miR-6846-5p 1 0 0
chr7:130133259|130133428 hsa-miR-6848-5p 1 0 0
chr7:130133259|130133428 hsa-miR-1910-3p 0 1 0
chr7:130133259|130133428 hsa-miR-6511a-5p 0 1 0
chr7:130133259|130133428 hsa-miR-7843-5p 1 0 0
chr7:130133259|130133428 hsa-miR-33b-3p 1 0 0
chr7:130133259|130133428 hsa-miR-3619-5p 0 1 0
chr7:130133259|130133428 hsa-miR-6838-5p 0 1 0
chr7:130133259|130133428 hsa-miR-26a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:130133259|130133428
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MRYSQPSYYSPVNLSAIYRNIWIYTDYI
Nucleotide Sequence TTGAGGTACTCCCAGCCGTCTTACTACAGTCCTGTAAATTTAAGTGCAATATATAGAAACATATGGATATATACAGATTATATATAG
CircID chr7:130133259|130133428
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MYISICFYILHLNLQDCSKTAGSTSKRQRSSRHKLS
Nucleotide Sequence CTGTATATATCCATATGTTTCTATATATTGCACTTAAATTTACAGGACTGTAGTAAGACGGCTGGGAGTACCTCAAAGAGGCAGAGAAGCAGCAGGCATAAACTTTCCTAA
CircID chr7:130133259|130133428
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MGVPQRGREAAGINFPKSSKQCQEFRVLVI
Nucleotide Sequence CTGGGAGTACCTCAAAGAGGCAGAGAAGCAGCAGGCATAAACTTTCCTAAATCAAGTAAACAGTGTCAGGAATTCCGAGTGCTGGTTATA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab