CircRNA Information

General Information
circRNA Basic Information
CircID chr7:131503485|131503691
Strand -
CircType exon
Host Gene ENSG00000128567.15;
Algorism CIRI2;
Sequence CAGCCTGGACTCGAGTGTCCCCTTCTCTCCTCACCTGCACGCAGGTCCCCTAAGCAGACCTGGTTCACGCACGGAGACCTGTGTGGGTTAAGCCCCCATCTCACGAAGCAAATGTGAGAAAATCCGAATCCAGAACAAGGGGTTCAAGGTTATGAATAACCTGTGCTAATCCCAGAGGCCCCAGGACAGAGTAAGTGGGAACAAACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:131503485|131503691 hsa-miR-23a-5p 0 0 1
chr7:131503485|131503691 hsa-miR-23a-3p 0 0 1
chr7:131503485|131503691 hsa-miR-23b-5p 0 0 1
chr7:131503485|131503691 hsa-miR-23b-3p 0 0 1
chr7:131503485|131503691 hsa-miR-143-5p 0 0 1
chr7:131503485|131503691 hsa-miR-143-3p 0 0 1
chr7:131503485|131503691 hsa-miR-154-5p 0 0 1
chr7:131503485|131503691 hsa-miR-154-3p 0 0 1
chr7:131503485|131503691 hsa-miR-185-5p 0 0 1
chr7:131503485|131503691 hsa-miR-185-3p 0 0 1
chr7:131503485|131503691 hsa-miR-375-5p 0 0 1
chr7:131503485|131503691 hsa-miR-375-3p 0 0 1
chr7:131503485|131503691 hsa-miR-326 0 0 1
chr7:131503485|131503691 hsa-miR-492 1 1 1
chr7:131503485|131503691 hsa-miR-657 0 0 1
chr7:131503485|131503691 hsa-miR-1229-5p 0 0 1
chr7:131503485|131503691 hsa-miR-1229-3p 0 0 1
chr7:131503485|131503691 hsa-miR-1290 0 0 1
chr7:131503485|131503691 hsa-miR-1299 0 0 1
chr7:131503485|131503691 hsa-miR-125a-3p 1 1 1
chr7:131503485|131503691 hsa-miR-188-3p 0 0 1
chr7:131503485|131503691 hsa-miR-330-5p 0 0 1
chr7:131503485|131503691 hsa-miR-342-3p 0 0 1
chr7:131503485|131503691 hsa-miR-1260 0 0 1
chr7:131503485|131503691 hsa-miR-664 0 0 1
chr7:131503485|131503691 hsa-miR-516b 0 0 1
chr7:131503485|131503691 hsa-miR-637 1 0 0
chr7:131503485|131503691 hsa-miR-658 1 0 0
chr7:131503485|131503691 hsa-miR-765 1 0 0
chr7:131503485|131503691 hsa-miR-3132 1 0 0
chr7:131503485|131503691 hsa-miR-3154 1 1 0
chr7:131503485|131503691 hsa-miR-3193 0 1 0
chr7:131503485|131503691 hsa-miR-3649 0 1 0
chr7:131503485|131503691 hsa-miR-3661 1 0 0
chr7:131503485|131503691 hsa-miR-3665 0 1 0
chr7:131503485|131503691 hsa-miR-4440 1 0 0
chr7:131503485|131503691 hsa-miR-4449 1 0 0
chr7:131503485|131503691 hsa-miR-4488 1 0 0
chr7:131503485|131503691 hsa-miR-4689 1 1 0
chr7:131503485|131503691 hsa-miR-4706 1 0 0
chr7:131503485|131503691 hsa-miR-4710 0 1 0
chr7:131503485|131503691 hsa-miR-4784 1 1 0
chr7:131503485|131503691 hsa-miR-5192 1 0 0
chr7:131503485|131503691 hsa-miR-6090 1 0 0
chr7:131503485|131503691 hsa-miR-378j 0 1 0
chr7:131503485|131503691 hsa-miR-8085 1 0 0
chr7:131503485|131503691 hsa-miR-8089 1 0 0
chr7:131503485|131503691 hsa-miR-6734-5p 1 1 0
chr7:131503485|131503691 hsa-miR-3150a-3p 1 0 0
chr7:131503485|131503691 hsa-miR-7106-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6759-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6742-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6798-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6770-5p 0 1 0
chr7:131503485|131503691 hsa-miR-6760-5p 1 0 0
chr7:131503485|131503691 hsa-miR-3150b-3p 1 0 0
chr7:131503485|131503691 hsa-miR-1343-3p 1 1 0
chr7:131503485|131503691 hsa-miR-6786-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6852-5p 1 1 0
chr7:131503485|131503691 hsa-miR-6749-5p 1 0 0
chr7:131503485|131503691 hsa-miR-1266-3p 1 0 0
chr7:131503485|131503691 hsa-miR-4733-3p 0 1 0
chr7:131503485|131503691 hsa-miR-6824-5p 1 1 0
chr7:131503485|131503691 hsa-miR-6789-5p 1 0 0
chr7:131503485|131503691 hsa-miR-3664-5p 0 1 0
chr7:131503485|131503691 hsa-miR-6812-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6870-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6752-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6803-5p 1 0 0
chr7:131503485|131503691 hsa-miR-1249-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6763-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6797-5p 1 1 0
chr7:131503485|131503691 hsa-miR-7111-5p 1 0 0
chr7:131503485|131503691 hsa-miR-4728-5p 1 0 0
chr7:131503485|131503691 hsa-miR-5196-5p 1 0 0
chr7:131503485|131503691 hsa-miR-4649-5p 1 0 0
chr7:131503485|131503691 hsa-miR-4749-5p 1 0 0
chr7:131503485|131503691 hsa-miR-675-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6794-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6795-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6858-5p 1 1 0
chr7:131503485|131503691 hsa-miR-939-5p 1 0 0
chr7:131503485|131503691 hsa-miR-4665-5p 1 0 0
chr7:131503485|131503691 hsa-miR-4667-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6791-5p 1 0 0
chr7:131503485|131503691 hsa-miR-6753-3p 1 0 0
chr7:131503485|131503691 hsa-miR-6762-5p 1 0 0
chr7:131503485|131503691 hsa-miR-4757-5p 0 1 0
chr7:131503485|131503691 hsa-miR-6783-3p 1 1 0
chr7:131503485|131503691 hsa-miR-619-5p 0 1 0
chr7:131503485|131503691 hsa-miR-6506-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr7:131503485|131503691
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MDSSVPFSPHLHAGPLSRPGSRTETCVG
Nucleotide Sequence CTGGACTCGAGTGTCCCCTTCTCTCCTCACCTGCACGCAGGTCCCCTAAGCAGACCTGGTTCACGCACGGAGACCTGTGTGGGTTAA
CircID chr7:131503485|131503691
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MVHARRPVWVKPPSHEANVRKSESRTRGSRL
Nucleotide Sequence CTGGTTCACGCACGGAGACCTGTGTGGGTTAAGCCCCCATCTCACGAAGCAAATGTGAGAAAATCCGAATCCAGAACAAGGGGTTCAAGGTTATGA
CircID chr7:131503485|131503691
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MGPLGLAQVIHNLEPLVLDSDFLTFAS
Nucleotide Sequence CTGGGGCCTCTGGGATTAGCACAGGTTATTCATAACCTTGAACCCCTTGTTCTGGATTCGGATTTTCTCACATTTGCTTCGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab