CircRNA Information

General Information
circRNA Basic Information
CircID chr7:135164399|135164564
Strand -
CircType exon
Host Gene ENSG00000146859.6;
Algorism CIRI2;
Sequence TGCTGTGACTTCCCCGCAGGTCCCCCGGCAGAGGGCAGTAGAGATGGCCGGCCCAAGGCCTCGGTGGCGCGACCAGCTGCTGTTCATGAGCATCATAGTCCTCGTGATTGTGGTCATCTGCCTGATGTTTTACGCTCTTCTCTGGGAGGCTGGCAACCTCACTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:135164399|135164564 hsa-miR-224-5p 0 0 1
chr7:135164399|135164564 hsa-miR-224-3p 0 0 1
chr7:135164399|135164564 hsa-miR-492 1 1 1
chr7:135164399|135164564 hsa-miR-611 0 0 1
chr7:135164399|135164564 hsa-miR-635 0 0 1
chr7:135164399|135164564 hsa-miR-646 0 0 1
chr7:135164399|135164564 hsa-miR-744-5p 0 0 1
chr7:135164399|135164564 hsa-miR-744-3p 0 0 1
chr7:135164399|135164564 hsa-miR-1202 0 1 1
chr7:135164399|135164564 hsa-miR-1294 0 1 1
chr7:135164399|135164564 hsa-miR-1253 0 0 1
chr7:135164399|135164564 hsa-miR-1272 0 0 1
chr7:135164399|135164564 hsa-miR-1322 0 0 1
chr7:135164399|135164564 hsa-miR-1207-3p 0 0 1
chr7:135164399|135164564 hsa-miR-637 1 0 0
chr7:135164399|135164564 hsa-miR-4422 0 1 0
chr7:135164399|135164564 hsa-miR-4440 1 0 0
chr7:135164399|135164564 hsa-miR-3972 1 1 0
chr7:135164399|135164564 hsa-miR-4734 0 1 0
chr7:135164399|135164564 hsa-miR-4759 0 1 0
chr7:135164399|135164564 hsa-miR-5787 1 0 0
chr7:135164399|135164564 hsa-miR-8089 1 0 0
chr7:135164399|135164564 hsa-miR-9986 1 1 0
chr7:135164399|135164564 hsa-miR-370-3p 1 0 0
chr7:135164399|135164564 hsa-miR-3194-3p 1 0 0
chr7:135164399|135164564 hsa-miR-6089 1 0 0
chr7:135164399|135164564 hsa-miR-874-3p 1 0 0
chr7:135164399|135164564 hsa-miR-4711-5p 0 1 0
chr7:135164399|135164564 hsa-miR-4697-3p 0 1 0
chr7:135164399|135164564 hsa-miR-3194-5p 1 1 0
chr7:135164399|135164564 hsa-miR-3944-3p 1 0 0
chr7:135164399|135164564 hsa-miR-6784-5p 0 1 0
chr7:135164399|135164564 hsa-miR-887-3p 1 0 0
chr7:135164399|135164564 hsa-miR-6749-5p 1 0 0
chr7:135164399|135164564 hsa-miR-6501-5p 0 1 0
chr7:135164399|135164564 hsa-miR-4787-5p 1 0 0
chr7:135164399|135164564 hsa-miR-7154-5p 0 1 0
chr7:135164399|135164564 hsa-miR-5197-3p 0 1 0
chr7:135164399|135164564 hsa-miR-3675-3p 0 1 0
chr7:135164399|135164564 hsa-miR-6870-5p 1 0 0
chr7:135164399|135164564 hsa-miR-6737-5p 1 0 0
chr7:135164399|135164564 hsa-miR-3620-5p 1 0 0
chr7:135164399|135164564 hsa-miR-6780b-5p 0 1 0
chr7:135164399|135164564 hsa-miR-328-5p 1 0 0
chr7:135164399|135164564 hsa-miR-4725-3p 0 1 0
chr7:135164399|135164564 hsa-miR-4745-5p 1 0 0
chr7:135164399|135164564 hsa-miR-4749-5p 0 1 0
chr7:135164399|135164564 hsa-miR-6794-5p 1 0 0
chr7:135164399|135164564 hsa-miR-6885-5p 1 0 0
chr7:135164399|135164564 hsa-miR-377-5p 0 1 0
chr7:135164399|135164564 hsa-miR-4665-5p 1 0 0
chr7:135164399|135164564 hsa-miR-6893-3p 1 0 0
chr7:135164399|135164564 hsa-miR-769-3p 1 0 0
chr7:135164399|135164564 hsa-miR-6827-3p 0 1 0
chr7:135164399|135164564 hsa-miR-4684-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:135164399|135164564
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MAGPRPRWRDQLLFMSIIVLVIVVICLMFYALLWEAGNLTD
Nucleotide Sequence ATGGCCGGCCCAAGGCCTCGGTGGCGCGACCAGCTGCTGTTCATGAGCATCATAGTCCTCGTGATTGTGGTCATCTGCCTGATGTTTTACGCTCTTCTCTGGGAGGCTGGCAACCTCACTGAC
CircID chr7:135164399|135164564
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MVAPPRPWAGHLYCPLPGDLRGSHS
Nucleotide Sequence CTGGTCGCGCCACCGAGGCCTTGGGCCGGCCATCTCTACTGCCCTCTGCCGGGGGACCTGCGGGGAAGTCACAGC
CircID chr7:135164399|135164564
ORF Type ORF3
Protein Length 39
Nucleotide Length 117
Protein Sequence MTTITRTMMLMNSSWSRHRGLGPAISTALCRGTCGEVTA
Nucleotide Sequence ATGACCACAATCACGAGGACTATGATGCTCATGAACAGCAGCTGGTCGCGCCACCGAGGCCTTGGGCCGGCCATCTCTACTGCCCTCTGCCGGGGGACCTGCGGGGAAGTCACAGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab