CircRNA Information

General Information
circRNA Basic Information
CircID chr7:135632139|135632355
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCCTGTGCCTCAGCCTCCTCAGCTGTAAAATGTGGATAATGACAGTTCTACCTCATAAGACTGCTGTGTCTTCCAATCAATTAACATGTCAAGTATTTAAAACAGTACCTGGCACATACATGCTTAATAAATGCCAGCTACTATCATTTATATTACATATTCTAAGCAAAAGAAAATCATAATCGGCCGTCCTGTCATTAAAGAACAAAGACAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr7:135632139|135632355 hsa-let-7b-5p 0 0 1
chr7:135632139|135632355 hsa-let-7b-3p 0 0 1
chr7:135632139|135632355 hsa-let-7c-5p 0 0 1
chr7:135632139|135632355 hsa-let-7c-3p 0 0 1
chr7:135632139|135632355 hsa-let-7d-5p 0 0 1
chr7:135632139|135632355 hsa-let-7d-3p 0 0 1
chr7:135632139|135632355 hsa-let-7e-5p 0 0 1
chr7:135632139|135632355 hsa-let-7e-3p 0 0 1
chr7:135632139|135632355 hsa-miR-98-5p 0 0 1
chr7:135632139|135632355 hsa-miR-98-3p 0 0 1
chr7:135632139|135632355 hsa-let-7g-5p 0 0 1
chr7:135632139|135632355 hsa-let-7g-3p 0 0 1
chr7:135632139|135632355 hsa-let-7i-5p 0 0 1
chr7:135632139|135632355 hsa-let-7i-3p 0 0 1
chr7:135632139|135632355 hsa-miR-375-5p 0 0 1
chr7:135632139|135632355 hsa-miR-375-3p 0 0 1
chr7:135632139|135632355 hsa-miR-380-5p 0 0 1
chr7:135632139|135632355 hsa-miR-380-3p 0 0 1
chr7:135632139|135632355 hsa-miR-452-5p 0 0 1
chr7:135632139|135632355 hsa-miR-452-3p 0 0 1
chr7:135632139|135632355 hsa-miR-489-5p 0 0 1
chr7:135632139|135632355 hsa-miR-489-3p 0 0 1
chr7:135632139|135632355 hsa-miR-511-5p 0 0 1
chr7:135632139|135632355 hsa-miR-511-3p 0 0 1
chr7:135632139|135632355 hsa-miR-202-5p 0 0 1
chr7:135632139|135632355 hsa-miR-202-3p 0 0 1
chr7:135632139|135632355 hsa-miR-567 0 0 1
chr7:135632139|135632355 hsa-miR-569 0 0 1
chr7:135632139|135632355 hsa-miR-616-5p 0 0 1
chr7:135632139|135632355 hsa-miR-616-3p 0 0 1
chr7:135632139|135632355 hsa-miR-297 0 1 1
chr7:135632139|135632355 hsa-miR-1227-5p 0 0 1
chr7:135632139|135632355 hsa-miR-1227-3p 0 0 1
chr7:135632139|135632355 hsa-miR-1256 0 0 1
chr7:135632139|135632355 hsa-miR-1827 0 0 1
chr7:135632139|135632355 hsa-miR-485-5p 0 0 1
chr7:135632139|135632355 hsa-miR-509-3p 0 0 1
chr7:135632139|135632355 hsa-miR-455-5p 0 0 1
chr7:135632139|135632355 hsa-miR-220c 0 0 1
chr7:135632139|135632355 hsa-miR-7 0 0 1
chr7:135632139|135632355 hsa-let-7a 0 0 1
chr7:135632139|135632355 hsa-let-7f 0 0 1
chr7:135632139|135632355 hsa-miR-3196 1 0 0
chr7:135632139|135632355 hsa-miR-4478 0 1 0
chr7:135632139|135632355 hsa-miR-4479 1 0 0
chr7:135632139|135632355 hsa-miR-4481 1 0 0
chr7:135632139|135632355 hsa-miR-4498 1 0 0
chr7:135632139|135632355 hsa-miR-4538 1 0 0
chr7:135632139|135632355 hsa-miR-4656 1 0 0
chr7:135632139|135632355 hsa-miR-4689 1 0 0
chr7:135632139|135632355 hsa-miR-5787 0 1 0
chr7:135632139|135632355 hsa-miR-6125 1 0 0
chr7:135632139|135632355 hsa-miR-8089 1 0 0
chr7:135632139|135632355 hsa-miR-7-5p 0 1 0
chr7:135632139|135632355 hsa-miR-6734-5p 1 0 0
chr7:135632139|135632355 hsa-miR-6765-5p 1 0 0
chr7:135632139|135632355 hsa-miR-6861-5p 1 0 0
chr7:135632139|135632355 hsa-miR-6825-5p 1 0 0
chr7:135632139|135632355 hsa-miR-4695-5p 0 1 0
chr7:135632139|135632355 hsa-miR-6744-5p 1 0 0
chr7:135632139|135632355 hsa-miR-4722-5p 1 0 0
chr7:135632139|135632355 hsa-miR-7160-5p 1 1 0
chr7:135632139|135632355 hsa-miR-512-3p 1 0 0
chr7:135632139|135632355 hsa-miR-197-5p 1 0 0
chr7:135632139|135632355 hsa-miR-3150b-3p 1 0 0
chr7:135632139|135632355 hsa-miR-6771-5p 1 0 0
chr7:135632139|135632355 hsa-miR-877-5p 1 0 0
chr7:135632139|135632355 hsa-let-7f-5p 0 1 0
chr7:135632139|135632355 hsa-miR-1244 1 1 0
chr7:135632139|135632355 hsa-miR-6737-5p 1 0 0
chr7:135632139|135632355 hsa-miR-6754-5p 1 0 0
chr7:135632139|135632355 hsa-miR-6819-5p 1 0 0
chr7:135632139|135632355 hsa-miR-11181-3p 1 0 0
chr7:135632139|135632355 hsa-miR-6763-5p 1 0 0
chr7:135632139|135632355 hsa-miR-7111-5p 1 0 0
chr7:135632139|135632355 hsa-miR-6858-5p 1 1 0
chr7:135632139|135632355 hsa-miR-6831-5p 1 0 0
chr7:135632139|135632355 hsa-miR-1914-3p 1 0 0
chr7:135632139|135632355 hsa-miR-4700-5p 1 0 0
chr7:135632139|135632355 hsa-miR-6884-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr7:135632139|135632355
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MPATIIYITYSKQKKIIIGRPVIKEQRQ
Nucleotide Sequence ATGCCAGCTACTATCATTTATATTACATATTCTAAGCAAAAGAAAATCATAATCGGCCGTCCTGTCATTAAAGAACAAAGACAA
CircID chr7:135632139|135632355
ORF Type ORF2
Protein Length 59
Nucleotide Length 180
Protein Sequence MCLSLLSCKMWIMTVLPHKTAVSSNQLTCQVFKTVPGTYMLNKCQLLSFILHILSKRKS
Nucleotide Sequence CTGTGCCTCAGCCTCCTCAGCTGTAAAATGTGGATAATGACAGTTCTACCTCATAAGACTGCTGTGTCTTCCAATCAATTAACATGTCAAGTATTTAAAACAGTACCTGGCACATACATGCTTAATAAATGCCAGCTACTATCATTTATATTACATATTCTAAGCAAAAGAAAATCATAA
CircID chr7:135632139|135632355
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence LSLFFNDRTADYDFLLLRICNINDSSWHLLSMYVPGTVLNT
Nucleotide Sequence TTGTCTTTGTTCTTTAATGACAGGACGGCCGATTATGATTTTCTTTTGCTTAGAATATGTAATATAAATGATAGTAGCTGGCATTTATTAAGCATGTATGTGCCAGGTACTGTTTTAAATACTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab